RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 SH2D7A6NKC9 451 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 EEF1E1-BLOC1S5C9J1V9 151 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 E9PLD3 99 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 C11orf98E9PRG8 122 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 CCDC179H3BU77 68 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 DUSP14O95147 198 aaKnown RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 NTN1O95631 604 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 CD3DP04234 171 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 SLC25A5P05141 298 aaKnown RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 ZNF708P17019 499 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 KLK2P20151 261 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 NTF3P20783 257 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 PPP1CCP36873 323 aaKnown RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 OPRK1P41145 380 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 VDAC2P45880 294 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 PFN3P60673 137 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 UBE2G1P62253 170 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 SERF2P84101 59 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 POU3F1Q03052 451 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 MEF2CQ06413 473 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 KLF5Q13887 457 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 TAL2Q16559 108 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 VWC2Q2TAL6 325 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 ZNF672Q499Z4 452 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 SPRNQ5BIV9 151 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 ZNF684Q5T5D7 378 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 LYRM7Q5U5X0 104 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 SLC35E4Q6ICL7 350 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 Q6P435 159 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 DUX4L9Q6RFH8 374 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 GOLT1AQ6ZVE7 132 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 TMEM150AQ86TG1 271 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 ZNF575Q86XF7 245 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 ZNF584Q8IVC4 421 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 FAM110DQ8TAY7 271 aaPredicted RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 FAM213BQ8TBF2 198 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 AAMDCQ9H7C9 122 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 ISG20L2Q9H9L3 353 aaKnown RBP4.49□□□□□ -1.69
CD44-236ENST00000533222 PRO0461Q9UI25 63 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 POLR1DQ9Y2S0 133 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 PIKFYVEQ9Y2I7 2098 aa4.49□□□□□ -1.69
CD44-236ENST00000533222 TNRC6AQ8NDV7 1962 aaKnown RBP4.48□□□□□ -1.69
CD44-236ENST00000533222 LTBP4Q8N2S1 1624 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 A0A1W2PS18 150 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 DAPL1A0PJW8 107 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FAM90A7PA6NKC0 464 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 C17orf100A8MU93 164 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FAM90A22PA8MWA6 464 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FAM90A12PA8MX19 464 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FAM90A23PA8MXZ1 464 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 H3BUT2 72 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 HSPB6O14558 160 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 NUPR1O60356 82 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 SNCGO76070 127 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 IGHV3-7P01780 117 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 IGHG2P01859 326 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 HLA-DQA1P01909 254 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 MT-ATP8P03928 68 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 SMIM13P0DJ93 91 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 CRYGAP11844 174 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 HLA-DRB4P13762 266 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 BCL3P20749 454 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 PSMB8P28062 276 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 SFTPDP35247 375 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 TNFRSF4P43489 277 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 CD164Q04900 197 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 LTBQ06643 244 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 PMS2CLQ68D20 193 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 NCBP2-AS2Q69YL0 99 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 TRNP1Q6NT89 227 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 PARM1Q6UWI2 310 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 ZNF793Q6ZN11 406 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 SBSPONQ8IVN8 264 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FAM219AQ8IW50 185 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 CLDN19Q8N6F1 224 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 ZNF645Q8N7E2 425 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 TPRX1Q8N7U7 411 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 TMEM99Q8N816 258 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 NUP35Q8NFH5 326 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 OR5D14Q8NGL3 314 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 OR10Q1Q8NGQ4 319 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 OR2AJ1Q8NGZ0 328 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 OTOSQ8NHW6 89 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 RNF128Q8TEB7 428 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 FGF14Q92915 247 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 ELSPBP1Q96BH3 223 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 ADAT3Q96EY9 351 aaPredicted RBP4.48□□□□□ -1.69
CD44-236ENST00000533222 SMIM7Q9BQ49 75 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 ZNF835Q9Y2P0 537 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 KLHDC2Q9Y2U9 406 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 HLA-DRB4X5D2U9 266 aa4.48□□□□□ -1.69
CD44-236ENST00000533222 COL5A3P25940 1745 aaPredicted RBP4.48□□□□□ -1.69
CD44-236ENST00000533222 SHROOM3Q8TF72 1996 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 KIAA1671Q9BY89 1806 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM240AA0A1B0GVK7 77 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 DNAJC9-AS1A6NH13 148 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 FAM90A8PA6NJQ4 464 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 NDUFC2-KCTD14E9PQ53 114 aa4.47□□□□□ -1.69
CD44-236ENST00000533222 KLF7O75840 302 aaPredicted RBP4.47□□□□□ -1.69
CD44-236ENST00000533222 APOMO95445 188 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms