RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 FXYD3Q14802 87 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 MRGPRG-AS1Q2M3A8 158 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 C9orf152Q5JTZ5 239 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 ABHD5Q8WTS1 349 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 DUX5Q96PT3 197 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 CIB3Q96Q77 187 aaPredicted RBP11.29□□□□□ -0.6
TRIM3-212ENST00000533064 RBKSQ9H477 322 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 PLEKHA3Q9HB20 300 aa11.29□□□□□ -0.6
TRIM3-212ENST00000533064 A0A1W2PN81 502 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 RPS10-NUDT3A0A1W2PQS6 291 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 LY86O95711 162 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 IAPPP10997 89 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 MYOD1P15172 320 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 CHRNA7P36544 502 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 PRCDQ00LT1 54 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 PDLIM3Q53GG5 364 aaPredicted RBP11.28□□□□□ -0.6
TRIM3-212ENST00000533064 SPINK9Q5DT21 86 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 RPL7L1Q6DKI1 246 aaKnown RBP11.28□□□□□ -0.6
TRIM3-212ENST00000533064 SLC7A5P1Q8MH63 180 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 DTD1Q8TEA8 209 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 SRSF12Q8WXF0 261 aaKnown RBP11.28□□□□□ -0.6
TRIM3-212ENST00000533064 ARPC1AQ92747 370 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 BSCL2Q96G97 398 aaPredicted RBP11.28□□□□□ -0.6
TRIM3-212ENST00000533064 SMIM3Q9BZL3 60 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 HIPK2Q9H2X6 1198 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 PSENENQ9NZ42 101 aa11.28□□□□□ -0.6
TRIM3-212ENST00000533064 BORCS7-ASMTA0A0B4J1R7 106 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 CX3CL1P78423 397 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 C10orf55Q5SWW7 151 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 STX12Q86Y82 276 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 UBAC2Q8NBM4 344 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 NPFFR1Q9GZQ6 430 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 HEYLQ9NQ87 328 aaPredicted RBP11.27□□□□□ -0.6
TRIM3-212ENST00000533064 NDUFA4L2Q9NRX3 87 aa11.27□□□□□ -0.6
TRIM3-212ENST00000533064 NIPBLQ6KC79 2804 aaeCLIP11.27□□□□□ -0.61
TRIM3-212ENST00000533064 IGHV7-81A0A0B4J1V7 117 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 CLDN34H7C241 214 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 SULT1A1P50225 295 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 HILS1P60008 231 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 ERHP84090 104 aaKnown RBP11.27□□□□□ -0.61
TRIM3-212ENST00000533064 ARSJQ5FYB0 599 aaPredicted RBP11.27□□□□□ -0.61
TRIM3-212ENST00000533064 SLC25A32Q9H2D1 315 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 WFDC1Q9HC57 220 aa11.27□□□□□ -0.61
TRIM3-212ENST00000533064 H3BP45 60 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 TRIM77I1YAP6 450 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 AMY1AP04745 511 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 EIF5AL1Q6IS14 154 aaKnown RBP11.26□□□□□ -0.61
TRIM3-212ENST00000533064 HSD17B13Q7Z5P4 300 aaPredicted RBP11.26□□□□□ -0.61
TRIM3-212ENST00000533064 HSPB9Q9BQS6 159 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 PRSS22Q9GZN4 317 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 ARV1Q9H2C2 271 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 PARP11Q9NR21 331 aa11.26□□□□□ -0.61
TRIM3-212ENST00000533064 LINC00862A6NCI5 91 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 SH2D7A6NKC9 451 aaPredicted RBP11.25□□□□□ -0.61
TRIM3-212ENST00000533064 CST7O76096 145 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 CRYBA1P05813 215 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 NMBP08949 121 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 RPP30P78346 268 aaKnown RBP11.25□□□□□ -0.61
TRIM3-212ENST00000533064 SSBP2P81877 361 aaPredicted RBP11.25□□□□□ -0.61
TRIM3-212ENST00000533064 ZNF266Q14584 549 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 SLC35E3Q7Z769 313 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 OR5C1Q8NGR4 320 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 SRSF8Q9BRL6 282 aaKnown RBP11.25□□□□□ -0.61
TRIM3-212ENST00000533064 ESM1Q9NQ30 184 aa11.25□□□□□ -0.61
TRIM3-212ENST00000533064 CUBNO60494 3623 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 E7EUB6 86 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TCF21O43680 179 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 IGHG2P01859 326 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 SNCAP37840 140 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 RPL15P61313 204 aaKnown RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 BLCAPP62952 87 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TMEM267Q0VDI3 215 aaPredicted RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 SPANXN5Q5MJ07 72 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TMEM14EPQ6UXP3 125 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 STPG2Q8N412 459 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 OR10W1Q8NGF6 305 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 OR1S2Q8NGQ3 325 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 SGMS2Q8NHU3 365 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 FAM103A1Q9BTL3 118 aaKnown RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 ATP6V0E1O15342 81 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 IFNA10P01566 189 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 RNASE1P07998 156 aaKnown RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 APELAP0DMC3 54 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 OR13C7P0DN81 318 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 HBG1P69891 147 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 HBG2P69892 147 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 NDPQ00604 133 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 CLINT1Q14677 625 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 FAM74A1Q5RGS3 127 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TMEM217Q8N7C4 229 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 LRRC20Q8TCA0 184 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 PCNPQ8WW12 178 aaKnown RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TMED6Q8WW62 240 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 TMEM68Q96MH6 324 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 GINS3Q9BRX5 216 aa11.24□□□□□ -0.61
TRIM3-212ENST00000533064 STRAPQ9Y3F4 350 aaKnown RBP11.24□□□□□ -0.61
TRIM3-212ENST00000533064 FAM181BA6NEQ2 426 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 CGB1A6NKQ9 187 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 TEX22C9J3V5 150 aa11.23□□□□□ -0.61
TRIM3-212ENST00000533064 INS-IGF2F8WCM5 200 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms