RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 HSD17B10Q99714 261 aaKnown RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 SIKE1Q9BRV8 207 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 ADAT1Q9BUB4 502 aaKnown RBP2.23□□□□□ -2.05
CD44-235ENST00000532339 SLC38A1Q9H2H9 487 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 OR52D1Q9H346 318 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 TXNIPQ9H3M7 391 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 HMG20AQ9NP66 347 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 CYTL1Q9NRR1 136 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 FLVCR2Q9UPI3 526 aa2.23□□□□□ -2.05
CD44-235ENST00000532339 A0A087WUJ7 227 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 IGHV2-26A0A0B4J1V2 119 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 OOSP1A8MZH6 123 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 KRBOX1C9JBD0 128 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 ZNF207O43670 478 aaKnown RBP2.22□□□□□ -2.05
CD44-235ENST00000532339 SPAG7O75391 227 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SLC22A5O76082 557 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 YIF1AO95070 293 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 GCGP01275 180 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 GUSBP08236 651 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 TPM1P09493 284 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SCTP09683 121 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 MLNP12872 115 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 TAC1P20366 129 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 MYL9P24844 172 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 DLX6P56179 175 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 COPZ1P61923 177 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 CDK5Q00535 292 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SLAQ13239 276 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 OR1Q1Q15612 314 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 HIST3H3Q16695 136 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SMUG1Q53HV7 270 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SPIN4Q56A73 249 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 TTC32Q5I0X7 151 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 Q5W150 140 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 ZNF660Q6AZW8 331 aaPredicted RBP2.22□□□□□ -2.05
CD44-235ENST00000532339 FAM71E1Q6IPT2 247 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 C5orf46Q6UWT4 87 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 COQ8AQ8NI60 647 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 STAG3L4Q8TBR4 150 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SLC7A6Q92536 515 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 TEX37Q96LM6 180 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 TEAD3Q99594 435 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 SCRT1Q9BWW7 348 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 MAP1LC3CQ9BXW4 147 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 ARMC7Q9H6L4 198 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 WFDC1Q9HC57 220 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 KLF12Q9Y4X4 402 aa2.22□□□□□ -2.05
CD44-235ENST00000532339 IGKV1-27A0A075B6S5 117 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 TMEM223A0PJW6 202 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 ZNF705GA8MUZ8 300 aaPredicted RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 BPY2O14599 106 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 WISP3O95389 354 aaPredicted RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 SERPINA1P01009 418 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 APCSP02743 223 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 C1QBP02746 253 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 C1QCP02747 245 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 CST2P09228 141 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 ZNF728P0DKX0 622 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 IGFBP3P17936 291 aaPredicted RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 POLR2IP36954 125 aaKnown RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 RWDD2BP57060 319 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 RPL18AQ02543 176 aaKnown RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 EBI3Q14213 229 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 C10orf128Q5T292 105 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 C6orf183Q5T699 404 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 SAXO1Q8IYX7 474 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 OR52P1PQ8NH57 321 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 CDC26Q8NHZ8 85 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 APOBEC3DQ96AK3 386 aaPredicted RBP2.21□□□□□ -2.06
CD44-235ENST00000532339 KCNS1Q96KK3 526 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 OR7D2Q96RA2 312 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 TMEM243Q9BU79 118 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 VCXQ9H320 206 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 PSG11Q9UQ72 335 aa2.21□□□□□ -2.06
CD44-235ENST00000532339 MUC12Q9UKN1 5478 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 MUC17Q685J3 4493 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 ARRDC5A6NEK1 342 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 FAM183AA6NL82 134 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 OR2AT4A6NND4 320 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 CENPBD1B2RD01 187 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 H0YJW9 148 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 RFXANKO14593 260 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 MPZL2O60487 215 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 TFF1P04155 84 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 TALDO1P37837 337 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 GPR4P46093 362 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 GABRA2P47869 451 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 HCCSP53701 268 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 HADHBP55084 474 aaKnown RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 TMED1Q13445 227 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 GNA13Q14344 377 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 CDK5R1Q15078 307 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 PTGES3Q15185 160 aaKnown RBP2.2□□□□□ -2.06
CD44-235ENST00000532339 ATP6V1FQ16864 119 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 DEFB114Q30KQ6 69 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 C12orf74Q32Q52 190 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 Q6ZRU5 148 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 ZNF676Q8N7Q3 588 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 Q8NAQ8 132 aa2.2□□□□□ -2.06
CD44-235ENST00000532339 UBAC2Q8NBM4 344 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms