RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 NAT1P18440 290 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 ELK1P19419 428 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 BMI1P35226 326 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 MFAP2P55001 183 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 APOC4P55056 127 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 TNFRSF9Q07011 255 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 SPSB3Q6PJ21 355 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 CADM3Q8N126 398 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 OR1L8Q8NGR8 309 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 GPX8Q8TED1 209 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 NDUFA4L2Q9NRX3 87 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 EXTL2Q9UBQ6 330 aa8.43□□□□□ -1.06
VPS28-214ENST00000531032 KIR2DL5BA0A0G2JN68 375 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 KIR2DL5BA0A0G2JPC4 375 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 A0A0J9YWU9 116 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 NUPR2A6NF83 97 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 F8W735 103 aaPredicted RBP8.42□□□□□ -1.06
VPS28-214ENST00000531032 NDUFA4O00483 81 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 UBE2CO00762 179 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 RGS5O15539 181 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 SPRY2O43597 315 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 RPA2P15927 270 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 ATF4P18848 351 aaPredicted RBP8.42□□□□□ -1.06
VPS28-214ENST00000531032 F2RP25116 425 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 EWSR1Q01844 656 aaKnown RBP eCLIP8.42□□□□□ -1.06
VPS28-214ENST00000531032 CTF1Q16619 201 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 DEFB135Q30KP9 77 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 ODF3L2Q3SX64 289 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 PHLDA2Q53GA4 152 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 LPCAT3Q6P1A2 487 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 DHRS11Q6UWP2 260 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 LYG2Q86SG7 212 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 KIR2DL5AQ8N109 375 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 KIR2DL5BQ8NHK3 375 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 LSM10Q969L4 123 aaKnown RBP8.42□□□□□ -1.06
VPS28-214ENST00000531032 C21orf62Q9NYP8 219 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 UBQLN2Q9UHD9 624 aa8.42□□□□□ -1.06
VPS28-214ENST00000531032 F11RQ9Y624 299 aaKnown RBP8.42□□□□□ -1.06
VPS28-214ENST00000531032 CXorf65A6NEN9 183 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 K7EIM0 57 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 K7EMT4 169 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 PGLYRP1O75594 196 aaPredicted RBP8.41□□□□□ -1.06
VPS28-214ENST00000531032 PGAM2P15259 253 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 ADMP35318 185 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 PMS2P11Q13670 270 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 RNASE10Q5GAN6 216 aaKnown RBP8.41□□□□□ -1.06
VPS28-214ENST00000531032 LAMTOR1Q6IAA8 161 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 SLC25A24Q6NUK1 477 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 CLVS1Q8IUQ0 354 aaPredicted RBP8.41□□□□□ -1.06
VPS28-214ENST00000531032 SCARB1Q8WTV0 552 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 FCAMRQ8WWV6 532 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 DGCR14Q96DF8 476 aaKnown RBP8.41□□□□□ -1.06
VPS28-214ENST00000531032 CHRDL1Q9BU40 450 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 HINT2Q9BX68 163 aa8.41□□□□□ -1.06
VPS28-214ENST00000531032 IGHV3-21A0A0B4J1V1 117 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 OR4C46A6NHA9 309 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 C15orf62A8K5M9 175 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 M0QYG6 137 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 SNAPC5O75971 98 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 LY6G6CO95867 125 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 KRASP01116 189 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 G6PCP35575 357 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 LPAR6P43657 344 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 CEMP1Q6PRD7 247 aaPredicted RBP8.4□□□□□ -1.06
VPS28-214ENST00000531032 OR5B3Q8NH48 314 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 C15orf40Q8WUR7 153 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 RNF183Q96D59 192 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 ZNF414Q96IQ9 312 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 C20orf24Q9BUV8 137 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 TMEM14BQ9NUH8 114 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 NSG2Q9Y328 171 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 OR51B2Q9Y5P1 312 aa8.4□□□□□ -1.06
VPS28-214ENST00000531032 IGHV3OR16-8A0A075B7F1 116 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 TBC1D26Q86UD7 250 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 LYSMD2Q8IV50 215 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 STPG3Q8N7X2 389 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 UBAC2Q8NBM4 344 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 OR1P1Q8NH06 330 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 RAB2BQ8WUD1 216 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 TSC22D3Q99576 134 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 MAP6D1Q9H9H5 199 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 PRNDQ9UKY0 176 aa8.39□□□□□ -1.07
VPS28-214ENST00000531032 DBX1A6NMT0 343 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 C15orf61A6NNL5 157 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 ZNF207O43670 478 aaKnown RBP8.38□□□□□ -1.07
VPS28-214ENST00000531032 CTSDP07339 412 aaPredicted RBP8.38□□□□□ -1.07
VPS28-214ENST00000531032 CTSGP08311 255 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 TBPP20226 339 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 FCGR2BP31994 310 aaPredicted RBP8.38□□□□□ -1.07
VPS28-214ENST00000531032 PPP5CP53041 499 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 SPCS2Q15005 226 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 Q56UQ5 140 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 OR52I2Q8NH67 350 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 GALNT14Q96FL9 552 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 OR10C1Q96KK4 312 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 TMEM56Q96MV1 263 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 RNF2Q99496 336 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 FAM212BQ9NTI7 297 aaPredicted RBP8.38□□□□□ -1.07
VPS28-214ENST00000531032 FKBP11Q9NYL4 201 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 KLK11Q9UBX7 282 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms