RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 EAF1Q96JC9 268 aaPredicted RBP15.75■□□□□ 0.11
VPS28-213ENST00000530983 GAFA1Q96PS6 74 aa15.75■□□□□ 0.11
VPS28-213ENST00000530983 RNF7Q9UBF6 113 aa15.75■□□□□ 0.11
VPS28-213ENST00000530983 LAMA5O15230 3695 aa15.75■□□□□ 0.11
VPS28-213ENST00000530983 IGKV1OR2-108A0A075B7D4 117 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 IGKV1-16P04430 117 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 AREGP15514 252 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 SELENOTP62341 195 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 DEFB108BQ8NET1 73 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 UHRF2Q96PU4 802 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 PRNDQ9UKY0 176 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 TP53TG3Q9ULZ0 132 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 SLC45A2Q9UMX9 530 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 FAM215AQ9Y5M1 114 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 LY96Q9Y6Y9 160 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 J3QR06 171 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 CRYABP02511 175 aaKnown RBP15.74■□□□□ 0.11
VPS28-213ENST00000530983 PRCDQ00LT1 54 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 LRFN3Q9BTN0 628 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 SFXN3Q9BWM7 321 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 ZNF257Q9Y2Q1 563 aa15.74■□□□□ 0.11
VPS28-213ENST00000530983 SMG1Q96Q15 3661 aaKnown RBP15.74■□□□□ 0.11
VPS28-213ENST00000530983 TRAV9-1A0A075B6T8 112 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 SRRM4A7MD48 611 aaKnown RBP15.73■□□□□ 0.11
VPS28-213ENST00000530983 GAGE1Q13065 139 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 Q6ZWC4 215 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 FAM216BQ8N7L0 139 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CORO2AQ92828 525 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 PLEKHA3Q9HB20 300 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 TMEM106BQ9NUM4 274 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 ZNRD1Q9P1U0 126 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 SLC25A10Q9UBX3 287 aaPredicted RBP15.73■□□□□ 0.11
VPS28-213ENST00000530983 IGHV1-46P01743 117 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CT45A6P0DMU7 189 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CT45A5P0DMU8 189 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CT45A7P0DMV0 189 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 PSG5Q15238 335 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 TOMM20LQ6UXN7 152 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CMTM2Q8TAZ6 248 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 CCL13Q99616 98 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 NABP2Q9BQ15 211 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 LINC00574Q9H8X3 128 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 PARD6AQ9NPB6 346 aa15.73■□□□□ 0.11
VPS28-213ENST00000530983 UPK2O00526 184 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 LGALS4P56470 323 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 LINC00310P59036 64 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 SNRNP40Q96DI7 357 aaKnown RBP15.72■□□□□ 0.11
VPS28-213ENST00000530983 ZNF503Q96F45 646 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 ARL2-SNX15V9GYD0 113 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 CACNA1HO95180 2353 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 CEACAM4O75871 244 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 TNFAIP6P98066 277 aaPredicted RBP15.72■□□□□ 0.11
VPS28-213ENST00000530983 OR5I1Q13606 314 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 C3orf36Q3SXR2 165 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 TPTE2P1Q5T6R2 138 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 SLC25A48Q6ZT89 311 aaKnown RBP15.72■□□□□ 0.11
VPS28-213ENST00000530983 C20orf144Q9BQM9 153 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 MIEN1Q9BRT3 115 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 MRPL18Q9H0U6 180 aaKnown RBP15.72■□□□□ 0.11
VPS28-213ENST00000530983 IL19Q9UHD0 177 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 V9GYV3 84 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 DYSFO75923 2080 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 DMXL1Q9Y485 3027 aa15.72■□□□□ 0.11
VPS28-213ENST00000530983 FRMD6-AS1P0C7T7 363 aa15.71■□□□□ 0.11
VPS28-213ENST00000530983 BRS3P32247 399 aa15.71■□□□□ 0.11
VPS28-213ENST00000530983 TEX43Q6ZNM6 134 aa15.71■□□□□ 0.11
VPS28-213ENST00000530983 ZNF788Q6ZQV5 615 aa15.71■□□□□ 0.11
VPS28-213ENST00000530983 C22orf34Q6ZV56 151 aa15.71■□□□□ 0.11
VPS28-213ENST00000530983 RPUSD1Q9UJJ7 312 aaKnown RBP15.71■□□□□ 0.11
VPS28-213ENST00000530983 A8MXE2 369 aa15.71■□□□□ 0.1
VPS28-213ENST00000530983 GATA2P23769 480 aaPredicted RBP15.71■□□□□ 0.1
VPS28-213ENST00000530983 KRTCAP3Q53RY4 240 aa15.71■□□□□ 0.1
VPS28-213ENST00000530983 IGF2-ASQ6U949 168 aa15.71■□□□□ 0.1
VPS28-213ENST00000530983 SLC35D1Q9NTN3 355 aa15.71■□□□□ 0.1
VPS28-213ENST00000530983 TEX50A0A1B0GTY4 177 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 CRYBB3P26998 211 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 RPEL1Q2QD12 228 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 CENPWQ5EE01 88 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 MMD2Q8IY49 270 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 ZADH2Q8N4Q0 377 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 LPAR2Q9HBW0 351 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 TMEM167BQ9NRX6 74 aa15.7■□□□□ 0.1
VPS28-213ENST00000530983 RTL8BQ17RB0 113 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 OR1L6Q8NGR2 347 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 TM4SF5O14894 197 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 CDKN1AP38936 164 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 GNG4P50150 75 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 MLANAQ16655 118 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 C21orf62-AS1Q17RA5 79 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 C2orf83Q53S99 150 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 TECRQ9NZ01 308 aaKnown RBP15.69■□□□□ 0.1
VPS28-213ENST00000530983 PAM16Q9Y3D7 125 aa15.69■□□□□ 0.1
VPS28-213ENST00000530983 HELTA6NFD8 242 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 SAA1P0DJI8 122 aaPredicted RBP15.68■□□□□ 0.1
VPS28-213ENST00000530983 ESDP10768 282 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 CRISP2P16562 243 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 RND1Q92730 232 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 SLC35E1Q96K37 410 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 OTOGLQ3ZCN5 2332 aa15.68■□□□□ 0.1
VPS28-213ENST00000530983 EP300Q09472 2414 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms