RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 J3QKU1 62 aa16.6■□□□□ 0.25
VPS28-209ENST00000528142 COL8A1P27658 744 aa16.6■□□□□ 0.25
VPS28-209ENST00000528142 ACOT6Q3I5F7 207 aaPredicted RBP16.6■□□□□ 0.25
VPS28-209ENST00000528142 ACTR3CQ9C0K3 210 aaPredicted RBP16.6■□□□□ 0.25
VPS28-209ENST00000528142 EIF3GO75821 320 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS28-209ENST00000528142 YIF1AO95070 293 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 MAS1LP35410 378 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 PMS2P11Q13670 270 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 TEPPQ6URK8 271 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 SLC25A22Q9H936 323 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 METTL1Q9UBP6 276 aaKnown RBP16.59■□□□□ 0.25
VPS28-209ENST00000528142 FBN2P35556 2912 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 LOC102723971A0A1B0GUV8 181 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 A0A1W2PRD5 423 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 A0A1W2PRF3 423 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 A0A1W2PRM7 423 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 SNAPINO95295 136 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 KHDC3LQ587J8 217 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 PPP1R27Q86WC6 154 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 RAB24Q969Q5 203 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 GNG13Q9P2W3 67 aa16.59■□□□□ 0.25
VPS28-209ENST00000528142 TACC2O95359 2948 aa16.58■□□□□ 0.25
VPS28-209ENST00000528142 SEC14L6B5MCN3 397 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 CYB5BO43169 146 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 HSPB1P04792 205 aaKnown RBP16.58■□□□□ 0.24
VPS28-209ENST00000528142 SRP19P09132 144 aaKnown RBP16.58■□□□□ 0.24
VPS28-209ENST00000528142 OR13C7P0DN81 318 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 CD69Q07108 199 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 MLANAQ16655 118 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 GCSAMLQ5JQS6 135 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 MINOS1Q5TGZ0 78 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 MIC13Q5XKP0 118 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 FAM122CQ6P4D5 195 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 TMEM144Q7Z5S9 345 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 FBXL15Q9H469 300 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 POLR3KQ9Y2Y1 108 aaPredicted RBP16.58■□□□□ 0.24
VPS28-209ENST00000528142 PXMP4Q9Y6I8 212 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 MINOS1-NBL1R4GNA1 71 aa16.58■□□□□ 0.24
VPS28-209ENST00000528142 IGLC7A0M8Q6 106 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 DNASE2O00115 360 aaPredicted RBP16.57■□□□□ 0.24
VPS28-209ENST00000528142 FOXH1O75593 365 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 RPL27AP46776 148 aaKnown RBP16.57■□□□□ 0.24
VPS28-209ENST00000528142 NPBWR1P48145 328 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 COMPP49747 757 aaPredicted RBP16.57■□□□□ 0.24
VPS28-209ENST00000528142 GAMTQ14353 236 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 TNXAQ16473 311 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 RXFP4Q8TDU9 374 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 C10orf105Q8TEF2 133 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 FAM168AQ92567 244 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 TBX15Q96SF7 602 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 P2RX4Q99571 388 aa16.57■□□□□ 0.24
VPS28-209ENST00000528142 OOSP1A8MZH6 123 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 VWC2LB2RUY7 222 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 TOX4O94842 621 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 BCL2P10415 239 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 GPX4P36969 197 aaPredicted RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 SSBP2P81877 361 aaPredicted RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 PVRIGQ6DKI7 326 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 DYNAPQ8N1N2 210 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 CACNG8Q8WXS5 425 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 KCNIP2Q9NS61 270 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 HELZ2Q9BYK8 2649 aaKnown RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 HMGB3O15347 200 aaKnown RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 ACTL6BO94805 426 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 DEFA4P12838 97 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 PAX6P26367 422 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 RPL29P47914 159 aaKnown RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 SUB1P53999 127 aaKnown RBP eCLIP16.56■□□□□ 0.24
VPS28-209ENST00000528142 CLRN3Q8NCR9 226 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 SUN5Q8TC36 379 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 RNASEH2CQ8TDP1 164 aaKnown RBP16.56■□□□□ 0.24
VPS28-209ENST00000528142 SSMEM1Q8WWF3 244 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 PIMREGQ9BSJ6 248 aa16.56■□□□□ 0.24
VPS28-209ENST00000528142 IGKV1OR2-108A0A075B7D4 117 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 FAM74A7A6NL05 159 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 NDUFS8O00217 210 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 MOSP00540 346 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 CDC34P49427 236 aaPredicted RBP16.55■□□□□ 0.24
VPS28-209ENST00000528142 PRR20EP86478 221 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 PRR20CP86479 221 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 PRR20DP86480 221 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 PRR20BP86481 221 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 PRR20AP86496 221 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 RAB31Q13636 194 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 SSX2Q16385 188 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 FAM74A3Q4VXF1 159 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.55■□□□□ 0.24
VPS28-209ENST00000528142 NPBQ8NG41 125 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 C17orf50Q8WW18 174 aa16.55■□□□□ 0.24
VPS28-209ENST00000528142 ZFP92A6NM28 416 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 FCN1O00602 326 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 FBP1P09467 338 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 UBE2E1P51965 193 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 ATP5J2P56134 94 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 B2MP61769 119 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 CCDC144NLQ6NUI1 221 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 SLC16A13Q7RTY0 426 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 EAF1Q96JC9 268 aaPredicted RBP16.54■□□□□ 0.24
VPS28-209ENST00000528142 SLC45A2Q9UMX9 530 aa16.54■□□□□ 0.24
VPS28-209ENST00000528142 IGHV4-61A0A0C4DH41 118 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms