RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 NPCDR1Q9BY65 106 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 ENY2Q9NPA8 101 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 FKBP11Q9NYL4 201 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 WASHC3Q9Y3C0 194 aa15.17■□□□□ 0.02
VPS28-207ENST00000526977 RAB11AP62491 216 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 PRCDQ00LT1 54 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 LDLRAD2Q5SZI1 272 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 CCDC144NLQ6NUI1 221 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 SSX7Q7RTT5 188 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 RCC1LQ96I51 464 aaKnown RBP15.16■□□□□ 0.02
VPS28-207ENST00000526977 WDR83OSQ9Y284 106 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 A0A1W2PRD5 423 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 A0A1W2PRF3 423 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 A0A1W2PRM7 423 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 IGKV1D-33P01593 117 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 IGKV1-33P01594 117 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 IFNA4P05014 189 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 RAB2AP61019 212 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 LHFPL4Q7Z7J7 247 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 RPP25LQ8N5L8 163 aaKnown RBP15.16■□□□□ 0.02
VPS28-207ENST00000526977 MALSU1Q96EH3 234 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 SMDT1Q9H4I9 107 aa15.16■□□□□ 0.02
VPS28-207ENST00000526977 PRRC2AP48634 2157 aaKnown RBP15.15■□□□□ 0.02
VPS28-207ENST00000526977 CSMD1Q96PZ7 3565 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 IGLV2-23P01705 113 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 NPY1RP25929 384 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 LCN15Q6UWW0 184 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 MOB3BQ86TA1 216 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 SLC24A4Q8NFF2 622 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 RITA1Q96K30 269 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 SLC35B3Q9H1N7 401 aa15.15■□□□□ 0.02
VPS28-207ENST00000526977 NPFFO15130 113 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 CA2P00918 260 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 HAGHQ16775 308 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 CYB5R2Q6BCY4 276 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 ZNF709Q8N972 641 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 OR5B3Q8NH48 314 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 PLEKHA3Q9HB20 300 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 HILPDAQ9Y5L2 63 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 A0A1W2PPI3 338 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 DLK1P80370 383 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 TMEM167AQ8TBQ9 72 aa15.14■□□□□ 0.01
VPS28-207ENST00000526977 IGHV1-69DA0A0B4J2H0 117 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 IGHV1-69P01742 117 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 RPL8P62917 257 aaKnown RBP15.13■□□□□ 0.01
VPS28-207ENST00000526977 SSX2Q16385 188 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 FFAR4Q5NUL3 377 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 TMEM88Q6PEY1 159 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 TREML4Q6UXN2 200 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 OR4A5Q8NH83 315 aa15.13■□□□□ 0.01
VPS28-207ENST00000526977 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.13■□□□□ 0.013e-7■■■■□ 19.9
VPS28-207ENST00000526977 TNCP24821 2201 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 IGHV3-72A0A0B4J1Y9 119 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 C17orf112F2Z3M2 114 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 MBP02144 154 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 SAA4P35542 130 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 FGF8P55075 233 aaPredicted RBP15.12■□□□□ 0.01
VPS28-207ENST00000526977 HABP2Q14520 560 aaPredicted RBP15.12■□□□□ 0.01
VPS28-207ENST00000526977 ICAM4Q14773 271 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 CLRN3Q8NCR9 226 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 VSTM2AQ8TAG5 236 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 NDUFA4L2Q9NRX3 87 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 SLC39A9Q9NUM3 307 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 SMCO3A2RU48 225 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 LGALS7P47929 136 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 ZNF506Q5JVG8 444 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 OR10W1Q8NGF6 305 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 OR10G4Q8NGN3 311 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 OR10G9Q8NGN4 311 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 OR10G7Q8NGN6 311 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 COMMD5Q9GZQ3 224 aa15.12■□□□□ 0.01
VPS28-207ENST00000526977 CCDC168Q8NDH2 2452 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 TRAV40A0A0B4J280 105 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 E7EUB6 86 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 TIMM23O14925 209 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 MPDU1O75352 247 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 EIF3GO75821 320 aaKnown RBP eCLIP15.11■□□□□ 0.01
VPS28-207ENST00000526977 OR13C7P0DN81 318 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 CBLN2Q8IUK8 224 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 PIP4P2Q8N4L2 257 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 OR1L8Q8NGR8 309 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 RNF5Q99942 180 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 NPVFQ9HCQ7 196 aa15.11■□□□□ 0.01
VPS28-207ENST00000526977 LOC105371267A0A1B0GV96 52 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 MAP1LC3B2A6NCE7 125 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 SRP19P09132 144 aaKnown RBP15.1■□□□□ 0.01
VPS28-207ENST00000526977 ARSJQ5FYB0 599 aaPredicted RBP15.1■□□□□ 0.01
VPS28-207ENST00000526977 MAP1LC3BQ9GZQ8 125 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 GNG13Q9P2W3 67 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 CR1P17927 2039 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 AVPP01185 164 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 ATP5IP56385 69 aaPredicted RBP15.1■□□□□ 0.01
VPS28-207ENST00000526977 BPIFB3P59826 476 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 BSXQ3C1V8 233 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 CIARTQ8N365 385 aaPredicted RBP15.1■□□□□ 0.01
VPS28-207ENST00000526977 RXFP4Q8TDU9 374 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 CFHR4Q92496 578 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 AJUBAQ96IF1 538 aa15.1■□□□□ 0.01
VPS28-207ENST00000526977 ZNF430Q9H8G1 570 aaPredicted RBP15.1■□□□□ 0.01
VPS28-207ENST00000526977 SLC25A17O43808 307 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms