RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CYB5BO43169 146 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 SFT2D2O95562 160 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 P0C879 139 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 NHLRC4P0CG21 123 aaPredicted RBP7.84□□□□□ -1.15
VPS28-204ENST00000526054 AREGP15514 252 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 PSMB6P28072 239 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 MECP2P51608 486 aaKnown RBP7.84□□□□□ -1.15
VPS28-204ENST00000526054 PPP1R1AQ13522 171 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 TATDN3Q17R31 274 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 ZNF429Q86V71 674 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 SLC35G3Q8N808 338 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 PRR25Q96S07 402 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 GPN1Q9HCN4 374 aaPredicted RBP7.84□□□□□ -1.15
VPS28-204ENST00000526054 NDUFA4L2Q9NRX3 87 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 SHPKQ9UHJ6 478 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 FLVCR2Q9UPI3 526 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 U3KQK5 164 aa7.84□□□□□ -1.15
VPS28-204ENST00000526054 TENM3Q9P273 2699 aa7.84□□□□□ -1.16
VPS28-204ENST00000526054 DYNC2H1Q8NCM8 4307 aaKnown RBP7.84□□□□□ -1.16
VPS28-204ENST00000526054 A0A1B0GVG6 124 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 IGLC7A0M8Q6 106 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 CGB1A6NKQ9 187 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 FAM223BA6NKX1 122 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 DBX1A6NMT0 343 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 HLA-AP01891 365 aaKnown RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 CRYGCP07315 174 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 LGALS1P09382 135 aaKnown RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 DEFA4P12838 97 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 HIST1H1BP16401 226 aaKnown RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 CTRB1P17538 263 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 ANXA7P20073 488 aaKnown RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 HSPE1P61604 102 aaKnown RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 PRCDQ00LT1 54 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 RUNX1Q01196 453 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 KIAA0141Q14154 515 aaPredicted RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 IZUMO4Q1ZYL8 232 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 C4orf46Q504U0 113 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 CTRB2Q6GPI1 263 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 FAM223AQ8IWN6 122 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 USMG5Q96IX5 58 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 OR5B12Q96R08 314 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 ALX4Q9H161 411 aaPredicted RBP7.83□□□□□ -1.16
VPS28-204ENST00000526054 GNB4Q9HAV0 340 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 PLEKHA3Q9HB20 300 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 PRR13Q9NZ81 148 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 CACFD1Q9UGQ2 172 aa7.83□□□□□ -1.16
VPS28-204ENST00000526054 A0A0B4J293 547 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 A0A0G2JRQ6 117 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 C7orf66A4D0T2 115 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 ST8SIA3O43173 380 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 IFNA17P01571 189 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 IGHV3-11P01762 117 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 PRH1P02810 166 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 IL5P05113 134 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 REG1AP05451 166 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 OR4E1P0C645 316 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 SULT1A3P0DMM9 295 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 SULT1A4P0DMN0 295 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 OR13C7P0DN81 318 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 RHOGP84095 191 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 FHL3Q13643 280 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 LYG2Q86SG7 212 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 LRTM2Q8N967 370 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 NECAP1Q8NC96 275 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 OR10W1Q8NGF6 305 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 COQ8AQ8NI60 647 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 GPR146Q96CH1 333 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 ENY2Q9NPA8 101 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.82□□□□□ -1.16
VPS28-204ENST00000526054 CACNG5Q9UF02 275 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 ZNF256Q9Y2P7 627 aaPredicted RBP7.82□□□□□ -1.16
VPS28-204ENST00000526054 LSM4Q9Y4Z0 139 aaKnown RBP7.82□□□□□ -1.16
VPS28-204ENST00000526054 ALG5Q9Y673 324 aa7.82□□□□□ -1.16
VPS28-204ENST00000526054 HUWE1Q7Z6Z7 4374 aaKnown RBP7.82□□□□□ -1.16
VPS28-204ENST00000526054 DNAH7Q8WXX0 4024 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 TRBV9A0A0B4J1U6 114 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 C9orf170A2RU37 121 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 SNRPGP15A8MWD9 76 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 I3L521 148 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR2J3O76001 311 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR8U8P0C7N1 319 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 HOXA1P49639 335 aaPredicted RBP7.81□□□□□ -1.16
VPS28-204ENST00000526054 SPCS3P61009 180 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 ERHP84090 104 aaKnown RBP7.81□□□□□ -1.16
VPS28-204ENST00000526054 DEFA5Q01523 94 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 ATP5G2Q06055 141 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 WT1-ASQ06250 92 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 ZNF616Q08AN1 781 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 DHRS2Q13268 280 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 EXOSC2Q13868 293 aaKnown RBP7.81□□□□□ -1.16
VPS28-204ENST00000526054 SMCO1Q147U7 214 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 ANKRD55Q3KP44 614 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 NMSQ5H8A3 153 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 FAM209BQ5JX69 171 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 LYZL2Q7Z4W2 148 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR11H1Q8NG94 326 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR1L6Q8NGR2 347 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR1N2Q8NGR9 330 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 OR52E5Q8NH55 327 aa7.81□□□□□ -1.16
VPS28-204ENST00000526054 THYN1Q9P016 225 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms