RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 SPATA46Q5T0L3 261 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 IBA57Q5T440 356 aaKnown RBP6.94□□□□□ -1.3
CSMD1-213ENST00000523488 H2BFWTQ7Z2G1 175 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 THYN1Q9P016 225 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 PILRBQ9UKJ0 227 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 SPCS1Q9Y6A9 102 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 HLA-DRB4X5D2U9 266 aa6.94□□□□□ -1.3
CSMD1-213ENST00000523488 OR9G9P0C7N8 305 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PAX8Q06710 450 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 C5orf64Q2M2E5 130 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TMEM97Q5BJF2 176 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 LINC01545Q5VT33 79 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 ZNF48Q96MX3 618 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TECRQ9NZ01 308 aaKnown RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 LOXL2Q9Y4K0 774 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 RRHO14718 337 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TNFRSF13BO14836 293 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TSPAN13O95857 204 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 SP1P08047 785 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 SRFP11831 508 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 RPL8P62917 257 aaKnown RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRR20EP86478 221 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRR20CP86479 221 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRR20DP86480 221 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRR20BP86481 221 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRR20AP86496 221 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 RAB31Q13636 194 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 MIC13Q5XKP0 118 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 Q6P435 159 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 OR13H1Q8NG92 308 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 SSMEM1Q8WWF3 244 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 MAP1LC3CQ9BXW4 147 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 ZNF576Q9H609 170 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PRDM6Q9NQX0 595 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 DEPPQ9NTK1 212 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TRAPPC2LQ9UL33 140 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 YTHDF2Q9Y5A9 579 aaKnown RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TRGV8A0A0C4DH27 118 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 A0A1W2PQF6 199 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 LRRC30A6NM36 301 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 NEURL1O76050 574 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PATE4P0C8F1 98 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 GCHFRP30047 84 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 MNX1P50219 401 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 FOXL2P58012 376 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 TMEM196Q5HYL7 178 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 SPACA3Q8IXA5 215 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 SPACA9Q96E40 222 aaPredicted RBP6.93□□□□□ -1.3
CSMD1-213ENST00000523488 ICE1Q9Y2F5 2266 aa6.93□□□□□ -1.3
CSMD1-213ENST00000523488 PSMB11A5LHX3 300 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 HBZP02008 142 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 MC5RP33032 325 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 GPM6AP51674 278 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 AESQ08117 197 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 HSD52Q0P140 79 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 CATR1Q13166 79 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 TEPPQ6URK8 271 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 SLC22A18ASQ8N1D0 253 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ZNF808Q8N4W9 903 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ZDHHC16Q969W1 377 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 PSMG3-AS1Q96PY0 264 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 SSBP3Q9BWW4 388 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-213ENST00000523488 NPVFQ9HCQ7 196 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 OR1A1Q9P1Q5 309 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 C9orf118A6NHY6 69 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 K7EQM0 130 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 FABP2P12104 132 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 CT83Q5H943 113 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 GDF5OSQ5U4N7 250 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ZNF497Q6ZNH5 498 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ZNF788Q6ZQV5 615 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 PERPQ96FX8 193 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 TNFRSF19Q9NS68 423 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 HILPDAQ9Y5L2 63 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 TRAV26-1A0A087WT03 109 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.92□□□□□ -1.3
CSMD1-213ENST00000523488 IGHV3-15A0A0B4J1V0 119 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ACTL6BO94805 426 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 MYCNOSP40205 109 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 VDAC2P45880 294 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-213ENST00000523488 ERVK11-1P61568 191 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 C20orf204Q6ZNR8 217 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 OR5A1Q8NGJ0 315 aa6.92□□□□□ -1.3
CSMD1-213ENST00000523488 COLQQ9Y215 455 aaPredicted RBP6.92□□□□□ -1.3
CSMD1-213ENST00000523488 A0A0G2JLM5 398 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 SRRM4A7MD48 611 aaKnown RBP6.91□□□□□ -1.3
CSMD1-213ENST00000523488 DLL1O00548 723 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 COX8AP10176 69 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 SLAQ13239 276 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 DHRS13Q6UX07 377 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 DYSFO75923 2080 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 A0A0G2JMM0 328 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 A0A1W2PPB8 328 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 KIR3DP1A8MWS1 328 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 SYS1-DBNDD2H3BUS1 97 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 CLDN14O95500 239 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 CA1P00915 261 aaPredicted RBP6.91□□□□□ -1.3
CSMD1-213ENST00000523488 CRYBA4P53673 196 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 STPG3Q8N7X2 389 aa6.91□□□□□ -1.3
CSMD1-213ENST00000523488 STXBP6Q8NFX7 210 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms