RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FAM110AQ9BQ89 295 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 HEYLQ9NQ87 328 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 LIN7CQ9NUP9 197 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF391Q9UJN7 358 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 ERG28Q9UKR5 140 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 WDR83OSQ9Y284 106 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 LY96Q9Y6Y9 160 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 PATE4P0C8F1 98 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 FASLGP48023 281 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 NMUP48645 174 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 Q6ZR03 302 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 OR4A16Q8NH70 328 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 ADTRPQ96IZ2 230 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 NDFIP1Q9BT67 221 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 ALKBH4Q9NXW9 302 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 CYSLTR1Q9Y271 337 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 PRR19A6NJB7 356 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNHIT1O43257 154 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 DAZAP2Q15038 168 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 LINC00479Q96M42 142 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 RNF208Q9H0X6 261 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 FAM90A26D6RGX4 464 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 VDAC2P45880 294 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 CYB561P49447 251 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 TAS2R45P59539 299 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 BMFQ96LC9 184 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 DUSP23Q9BVJ7 150 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 PLEKHA3Q9HB20 300 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 C1RLQ9NZP8 487 aa9.97□□□□□ -0.81
LIMCH1-213ENST00000511496 SCGB2A1O75556 95 aa9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 NCR2O95944 276 aa9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF808Q8N4W9 903 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 DDB2Q92466 427 aa9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 C18orf15Q96N68 181 aa9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 FGF21Q9NSA1 209 aa9.96□□□□□ -0.81
LIMCH1-213ENST00000511496 HIGD1CA8MV81 97 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 OR5AL1P0C617 328 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 MYF5P13349 255 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 C3AR1Q16581 482 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 ANKRD37Q7Z713 158 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 C11orf52Q96A22 123 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 DUSP13Q9UII6 198 aa9.96□□□□□ -0.82
LIMCH1-213ENST00000511496 A0A1B0GWB2 263 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 OTOL1A6NHN0 477 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 PRR33A8MZF0 331 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 NKX2-8O15522 239 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 EFNA2O43921 213 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 CCL2P13500 99 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 CA6P23280 308 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 TMPRSS3P57727 454 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 CST6Q15828 149 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 MOB1BQ7L9L4 216 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 NPIPB13A6NJU9 1138 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 C21orf140B9A014 251 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 NPIPB4C9JG80 1138 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 F8W1H4 67 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 KIR2DL2P43627 348 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 SPATA46Q5T0L3 261 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 FAM162BQ5T6X4 162 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 OR8A1Q8NGG7 326 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 GPR82Q96P67 336 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 A0A1W2PQD3 144 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 FAM90A27PA6NNH2 459 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 LAMTOR5O43504 91 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 IGLV2-14P01704 120 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 FGF6P10767 208 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 NOGQ13253 232 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 MGST2Q99735 147 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 TMUB1Q9BVT8 246 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 C1QTNF4Q9BXJ3 329 aa9.95□□□□□ -0.82
LIMCH1-213ENST00000511496 TMEM150CB9EJG8 249 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 TNFSF11O14788 317 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 CTGFP29279 349 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 CATR1Q13166 79 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 EFNB3Q15768 340 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 TREML4Q6UXN2 200 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 PCP2Q8IVA1 136 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 MBD6Q96DN6 1003 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 TEX50A0A1B0GTY4 177 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 A0A1W2PRD5 423 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 A0A1W2PRF3 423 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 A0A1W2PRM7 423 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 ZIC3O60481 467 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 FXYD2P54710 66 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 MIR17HGQ75NE6 70 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 BCL6BQ8N143 479 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 SNRNP40Q96DI7 357 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 NHP2Q9NX24 153 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 INSIG2Q9Y5U4 225 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 HTTP42858 3142 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 DRAM1Q8N682 238 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 ZNF488Q96MN9 340 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 GGTLC1Q9BX51 225 aa9.94□□□□□ -0.82
LIMCH1-213ENST00000511496 ABCA7Q8IZY2 2146 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 SMAD7O15105 426 aaKnown RBP9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 SYNGR1O43759 233 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 IGLV2-8P01709 118 aa9.93□□□□□ -0.82
LIMCH1-213ENST00000511496 NTF4P34130 210 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms