RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 STPG3Q8N7X2 389 aa16.35■□□□□ 0.21
HDDC3-203ENST00000494993 UBAC2Q8NBM4 344 aa16.35■□□□□ 0.21
HDDC3-203ENST00000494993 RNF183Q96D59 192 aa16.35■□□□□ 0.21
HDDC3-203ENST00000494993 FXYD6Q9H0Q3 95 aa16.35■□□□□ 0.21
HDDC3-203ENST00000494993 KMT2AQ03164 3969 aa16.35■□□□□ 0.21
HDDC3-203ENST00000494993 FRAS1Q86XX4 4008 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 CTSDP07339 412 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-203ENST00000494993 NAT1P18440 290 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 ATF4P18848 351 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-203ENST00000494993 Q56UQ5 140 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 UBE2NLQ5JXB2 153 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 CEMP1Q6PRD7 247 aaPredicted RBP16.34■□□□□ 0.21
HDDC3-203ENST00000494993 CROCCP3Q8IVE0 287 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 CMTM1Q8IZ96 169 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 TSPAN14Q8NG11 270 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 OR5H2Q8NGV7 314 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 GALNT14Q96FL9 552 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 TMEM56Q96MV1 263 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 PRNDQ9UKY0 176 aa16.34■□□□□ 0.21
HDDC3-203ENST00000494993 C15orf62A8K5M9 175 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 GPR31O00270 319 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 RPL35AP18077 110 aaKnown RBP16.33■□□□□ 0.2
HDDC3-203ENST00000494993 TGFBR1P36897 503 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 TAS2R46P59540 309 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 TAS2R20P59543 309 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 TMEM69Q5SWH9 247 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 OR5B3Q8NH48 314 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 FKBP11Q9NYL4 201 aa16.33■□□□□ 0.2
HDDC3-203ENST00000494993 ZNF414Q96IQ9 312 aa16.32■□□□□ 0.2
HDDC3-203ENST00000494993 MAP6D1Q9H9H5 199 aa16.32■□□□□ 0.2
HDDC3-203ENST00000494993 TMEM14BQ9NUH8 114 aa16.32■□□□□ 0.2
HDDC3-203ENST00000494993 SMPXQ9UHP9 88 aa16.32■□□□□ 0.2
HDDC3-203ENST00000494993 DBX1A6NMT0 343 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 C15orf61A6NNL5 157 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 CTSGP08311 255 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 SAMD12Q8N8I0 201 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 OR6F1Q8NGZ6 308 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 OR1P1Q8NH06 330 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 TSC22D3Q99576 134 aa16.31■□□□□ 0.2
HDDC3-203ENST00000494993 RELQ04864 619 aaPredicted RBP16.3■□□□□ 0.2
HDDC3-203ENST00000494993 TMEM217Q8N7C4 229 aa16.3■□□□□ 0.2
HDDC3-203ENST00000494993 RNF2Q99496 336 aa16.3■□□□□ 0.2
HDDC3-203ENST00000494993 KLK5Q9Y337 293 aaPredicted RBP16.3■□□□□ 0.2
HDDC3-203ENST00000494993 IGHV7-4-1A0A0J9YVY3 117 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 CHEK1O14757 476 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 NUPL2O15504 423 aaKnown RBP16.29■□□□□ 0.2
HDDC3-203ENST00000494993 FCGR2BP31994 310 aaPredicted RBP16.29■□□□□ 0.2
HDDC3-203ENST00000494993 PRSS3P35030 304 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 HRH1P35367 487 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 RPS19P39019 145 aaKnown RBP16.29■□□□□ 0.2
HDDC3-203ENST00000494993 KCTD21Q4G0X4 260 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 PHLDA2Q53GA4 152 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 APRG1Q8IVJ8 170 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 RHPN1-AS1Q9BWJ2 59 aa16.29■□□□□ 0.2
HDDC3-203ENST00000494993 C6orf62Q9GZU0 229 aaPredicted RBP16.29■□□□□ 0.2
HDDC3-203ENST00000494993 FAM212BQ9NTI7 297 aaPredicted RBP16.29■□□□□ 0.2
HDDC3-203ENST00000494993 MFAP4P55083 255 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 LYSMD2Q8IV50 215 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 TMEM116Q8NCL8 245 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 SLC25A46Q96AG3 418 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 MISP3Q96FF7 219 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 OR10C1Q96KK4 312 aa16.28■□□□□ 0.2
HDDC3-203ENST00000494993 I3L2K1 104 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 YIF1AO95070 293 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 HLA-DMAP28067 261 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 ZNF124Q15973 351 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 LPCAT3Q6P1A2 487 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 SEC22AQ96IW7 307 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 TXN2Q99757 166 aa16.27■□□□□ 0.2
HDDC3-203ENST00000494993 IGHV3-49A0A0A0MS15 119 aa16.26■□□□□ 0.19
HDDC3-203ENST00000494993 S100GP29377 79 aa16.26■□□□□ 0.19
HDDC3-203ENST00000494993 TFPI2P48307 235 aa16.26■□□□□ 0.19
HDDC3-203ENST00000494993 CMC4P56277 68 aaPredicted RBP16.26■□□□□ 0.19
HDDC3-203ENST00000494993 TBC1D26Q86UD7 250 aa16.26■□□□□ 0.19
HDDC3-203ENST00000494993 ZNF114Q8NC26 417 aa16.26■□□□□ 0.19
HDDC3-203ENST00000494993 NXF2Q9GZY0 626 aaKnown RBP16.26■□□□□ 0.19
HDDC3-203ENST00000494993 MT-CO2P00403 227 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 TSPAN5P62079 268 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 LSM3P62310 102 aaKnown RBP16.25■□□□□ 0.19
HDDC3-203ENST00000494993 PRCDQ00LT1 54 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 H2BFWTQ7Z2G1 175 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 OR4A16Q8NH70 328 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 GPX8Q8TED1 209 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 PHLDA1Q8WV24 401 aaPredicted RBP16.25■□□□□ 0.19
HDDC3-203ENST00000494993 CSTL1Q9H114 145 aa16.25■□□□□ 0.19
HDDC3-203ENST00000494993 IGKV3-7A0A075B6H7 116 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 TRAV14DV4A0A0A6YYC5 116 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 MPTX1A8MV57 137 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 IGKV1-39P01597 117 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 IGKV1D-39P04432 117 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 FAM90A2PQ658T7 463 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 GATAD1Q8WUU5 269 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 YIPF6Q96EC8 236 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 CMTM3Q96MX0 182 aa16.24■□□□□ 0.19
HDDC3-203ENST00000494993 GNG7O60262 68 aa16.23■□□□□ 0.19
HDDC3-203ENST00000494993 IGHV3-48P01763 117 aa16.23■□□□□ 0.19
HDDC3-203ENST00000494993 EIF4EP06730 217 aaKnown RBP16.23■□□□□ 0.19
HDDC3-203ENST00000494993 MRGPRFQ96AM1 343 aa16.23■□□□□ 0.19
HDDC3-203ENST00000494993 IGHV3OR16-13A0A075B7E8 117 aa16.22■□□□□ 0.19
HDDC3-203ENST00000494993 IGHV3-74A0A0B4J1X5 117 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms