RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, human

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4B-223	ENST00000493618	C15orf61	A6NNL5	157 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	FAM25A	B3EWG3	89 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	FAM25C	B3EWG5	89 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	FAM25G	B3EWG6	89 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618		F8W735	103 aa	Predicted RBP	10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618		K7EIM0	57 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	IGKV1-39	P01597	117 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	IGKV1D-39	P04432	117 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	RCVRN	P35243	200 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	ELL	P55199	621 aa	Predicted RBP	10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	ANKRD55	Q3KP44	614 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	OR2C3	Q8N628	320 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	MISP3	Q96FF7	219 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	BSCL2	Q96G97	398 aa	Predicted RBP	10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	TMEM56	Q96MV1	263 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	SCPEP1	Q9HB40	452 aa		10.93	□□□□□ -0.66
ATG4B-223	ENST00000493618	TRAV25	A0A0B4J276	109 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	IGHV3-48	P01763	117 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	PI3	P19957	117 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	S100G	P29377	79 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	ADM	P35318	185 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	IZUMO4	Q1ZYL8	232 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	SPINK9	Q5DT21	86 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	LPCAT3	Q6P1A2	487 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	H2BFWT	Q7Z2G1	175 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	SLC38A6	Q8IZM9	456 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	OR4A16	Q8NH70	328 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	MRGPRF	Q96AM1	343 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	SEC22A	Q96IW7	307 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	CMTM3	Q96MX0	182 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	TMEM14B	Q9NUH8	114 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	FKBP11	Q9NYL4	201 aa		10.92	□□□□□ -0.66
ATG4B-223	ENST00000493618	NDUFA4	O00483	81 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	PGAM2	P15259	253 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	RORC	P51449	518 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	SPSB3	Q6PJ21	355 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	OR5B3	Q8NH48	314 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	TSC22D3	Q99576	134 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	OVOL2	Q9BRP0	275 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	C5orf66	Q9H5L9	145 aa		10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	DAZ1	Q9NQZ3	744 aa	Known RBP	10.91	□□□□□ -0.66
ATG4B-223	ENST00000493618	IGHV3-49	A0A0A0MS15	119 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	SMIM18	P0DKX4	95 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	UCP3	P55916	312 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	CADM3	Q8N126	398 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	OR1P1	Q8NH06	330 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	OR52I2	Q8NH67	350 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	PINX1	Q96BK5	328 aa	Known RBP	10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	ZNF414	Q96IQ9	312 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	SPAG8	Q99932	426 aa	Predicted RBP	10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	KLK11	Q9UBX7	282 aa		10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618	EPPK1	P58107	5090 aa	Known RBP	10.9	□□□□□ -0.66
ATG4B-223	ENST00000493618		I3L2K1	104 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	TSPAN4	O14817	238 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	CTSD	P07339	412 aa	Predicted RBP	10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	CTSG	P08311	255 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	PPP5C	P53041	499 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	PRCD	Q00LT1	54 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	LAMTOR1	Q6IAA8	161 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	MZT2A	Q6P582	158 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	IL17D	Q8TAD2	202 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	FAM212B	Q9NTI7	297 aa	Predicted RBP	10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	EXTL2	Q9UBQ6	330 aa		10.89	□□□□□ -0.67
ATG4B-223	ENST00000493618	IGHV3OR16-13	A0A075B7E8	117 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	IGHV3-74	A0A0B4J1X5	117 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	YIF1A	O95070	293 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	MT-CO2	P00403	227 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	CD3D	P04234	171 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	RPL35A	P18077	110 aa	Known RBP	10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	MFAP4	P55083	255 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	HSPE1	P61604	102 aa	Known RBP	10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	CTF1	Q16619	201 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	ODF3L2	Q3SX64	289 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	RNASE10	Q5GAN6	216 aa	Known RBP	10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	GPR107	Q5VW38	600 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	TP53RK	Q96S44	253 aa		10.88	□□□□□ -0.67
ATG4B-223	ENST00000493618	IGKV3-7	A0A075B6H7	116 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618		K7EMT4	169 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	NUPL2	O15504	423 aa	Known RBP	10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	GABARAP	O95166	117 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	IGKV1-5	P01602	117 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	ZNF182	P17025	639 aa	Predicted RBP	10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	TFPI2	P48307	235 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	PIGP	P57054	158 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	ZNF124	Q15973	351 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	DEFB135	Q30KP9	77 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	LHFPL1	Q86WI0	220 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	OR4D10	Q8NGI6	311 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	ATP6V0B	Q99437	205 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	RNF2	Q99496	336 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	SMPX	Q9UHP9	88 aa		10.87	□□□□□ -0.67
ATG4B-223	ENST00000493618	IGHV7-4-1	A0A0J9YVY3	117 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618		A0A0J9YWU9	116 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	C15orf62	A8K5M9	175 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	CHEK1	O14757	476 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	JTB	O76095	146 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	RND3	P61587	244 aa		10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	ERH	P84090	104 aa	Known RBP	10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	EWSR1	Q01844	656 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
ATG4B-223	ENST00000493618	REL	Q04864	619 aa	Predicted RBP	10.86	□□□□□ -0.67

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