RNA–Protein interactions for RNA: ENST00000493601.5

PTPRU-208, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 5

Gene PTPRU, Length 695 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-208ENST00000493601 LPCAT3Q6P1A2 487 aa12.36□□□□□ -0.43
PTPRU-208ENST00000493601 WFDC3Q8IUB2 231 aa12.36□□□□□ -0.43
PTPRU-208ENST00000493601 CHRDL1Q9BU40 450 aa12.36□□□□□ -0.43
PTPRU-208ENST00000493601 FAM212BQ9NTI7 297 aaPredicted RBP12.36□□□□□ -0.43
PTPRU-208ENST00000493601 UBQLN2Q9UHD9 624 aa12.36□□□□□ -0.43
PTPRU-208ENST00000493601 KIR2DL5BA0A0G2JN68 375 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 KIR2DL5BA0A0G2JPC4 375 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 CXorf65A6NEN9 183 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 F8W735 103 aaPredicted RBP12.35□□□□□ -0.43
PTPRU-208ENST00000493601 K7EIM0 57 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 UBE2CO00762 179 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 SPRY2O43597 315 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 HLA-DMAP28067 261 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 BMI1P35226 326 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 TSPAN5P62079 268 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 LSM3P62310 102 aaKnown RBP12.35□□□□□ -0.43
PTPRU-208ENST00000493601 RELQ04864 619 aaPredicted RBP12.35□□□□□ -0.43
PTPRU-208ENST00000493601 DEFB135Q30KP9 77 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 PHLDA2Q53GA4 152 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 KIR2DL5AQ8N109 375 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 OR1P1Q8NH06 330 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 KIR2DL5BQ8NHK3 375 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 SLC25A46Q96AG3 418 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 YIPF6Q96EC8 236 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 HYDINQ4G0P3 5121 aa12.35□□□□□ -0.43
PTPRU-208ENST00000493601 IGHV3OR16-8A0A075B7F1 116 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 A0A0J9YWU9 116 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 NUPR2A6NF83 97 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 ADMP35318 185 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 TNFRSF9Q07011 255 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 ODF3L2Q3SX64 289 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 LYSMD2Q8IV50 215 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 SCPEP1Q9HB40 452 aa12.34□□□□□ -0.43
PTPRU-208ENST00000493601 ALMS1Q8TCU4 4167 aa12.33□□□□□ -0.43
PTPRU-208ENST00000493601 A0A087WXM4 84 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 SMIM31A0A1B0GVY4 71 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 DBX1A6NMT0 343 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 NUPL2O15504 423 aaKnown RBP12.33□□□□□ -0.44
PTPRU-208ENST00000493601 ZNF207O43670 478 aaKnown RBP12.33□□□□□ -0.44
PTPRU-208ENST00000493601 EIF4EP06730 217 aaKnown RBP12.33□□□□□ -0.44
PTPRU-208ENST00000493601 PMS2P11Q13670 270 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 H2BFWTQ7Z2G1 175 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 LYG2Q86SG7 212 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 TBC1D26Q86UD7 250 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 STPG3Q8N7X2 389 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 OR4A16Q8NH70 328 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 GPX8Q8TED1 209 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 MISP3Q96FF7 219 aa12.33□□□□□ -0.44
PTPRU-208ENST00000493601 PLECQ15149 4684 aaKnown RBP12.32□□□□□ -0.44
PTPRU-208ENST00000493601 APOA1P02647 267 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 CTSDP07339 412 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-208ENST00000493601 CTSGP08311 255 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 RCVRNP35243 200 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 ZNF114Q8NC26 417 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 LINC00476Q8WZB0 136 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 SEC22AQ96IW7 307 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 CMTM3Q96MX0 182 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 TXN2Q99757 166 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 C6orf62Q9GZU0 229 aaPredicted RBP12.32□□□□□ -0.44
PTPRU-208ENST00000493601 COMMD3Q9UBI1 195 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 SMPXQ9UHP9 88 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 BIRC6Q9NR09 4857 aa12.32□□□□□ -0.44
PTPRU-208ENST00000493601 IGHV7-4-1A0A0J9YVY3 117 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 TNFAIP8O95379 198 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 ATF4P18848 351 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-208ENST00000493601 FCGR2BP31994 310 aaPredicted RBP12.31□□□□□ -0.44
PTPRU-208ENST00000493601 MFAP4P55083 255 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 UCP3P55916 312 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 PRCDQ00LT1 54 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 SNX29P2Q8IUI4 249 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 TMEM217Q8N7C4 229 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 TMEM116Q8NCL8 245 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 RNF183Q96D59 192 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 GALNT14Q96FL9 552 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 OR10C1Q96KK4 312 aa12.31□□□□□ -0.44
PTPRU-208ENST00000493601 I3L2K1 104 aa12.3□□□□□ -0.44
PTPRU-208ENST00000493601 YIF1AO95070 293 aa12.3□□□□□ -0.44
PTPRU-208ENST00000493601 RPL35AP18077 110 aaKnown RBP12.3□□□□□ -0.44
PTPRU-208ENST00000493601 MRGPRFQ96AM1 343 aa12.3□□□□□ -0.44
PTPRU-208ENST00000493601 RNF2Q99496 336 aa12.3□□□□□ -0.44
PTPRU-208ENST00000493601 RHPN1-AS1Q9BWJ2 59 aa12.3□□□□□ -0.44
PTPRU-208ENST00000493601 CHEK1O14757 476 aa12.29□□□□□ -0.44
PTPRU-208ENST00000493601 IGKV1-39P01597 117 aa12.29□□□□□ -0.44
PTPRU-208ENST00000493601 IGKV1D-39P04432 117 aa12.29□□□□□ -0.44
PTPRU-208ENST00000493601 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
PTPRU-208ENST00000493601 EWSR1Q01844 656 aaKnown RBP eCLIP12.29□□□□□ -0.44
PTPRU-208ENST00000493601 NXF2Q9GZY0 626 aaKnown RBP12.29□□□□□ -0.44
PTPRU-208ENST00000493601 MAP6D1Q9H9H5 199 aa12.29□□□□□ -0.44
PTPRU-208ENST00000493601 TRAV14DV4A0A0A6YYC5 116 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 GNG7O60262 68 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 LY6G6CO95867 125 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 MT-CO2P00403 227 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 HSPE1P61604 102 aaKnown RBP12.28□□□□□ -0.44
PTPRU-208ENST00000493601 NCS1P62166 190 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 ERHP84090 104 aaKnown RBP12.28□□□□□ -0.44
PTPRU-208ENST00000493601 CEMP1Q6PRD7 247 aaPredicted RBP12.28□□□□□ -0.44
PTPRU-208ENST00000493601 PINX1Q96BK5 328 aaKnown RBP12.28□□□□□ -0.44
PTPRU-208ENST00000493601 ZNF414Q96IQ9 312 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 GINS3Q9BRX5 216 aa12.28□□□□□ -0.44
PTPRU-208ENST00000493601 KLK5Q9Y337 293 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms