RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 SLC25A17O43808 307 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 ARL14EPLP0DKL9 152 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 ERHP84090 104 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 ELOBQ15370 118 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 VMA21Q3ZAQ7 101 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 C10orf55Q5SWW7 151 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 ABCA4P78363 2273 aa17.04■□□□□ 0.32
CCDC88B-208ENST00000492980 IGHV3-72A0A0B4J1Y9 119 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 A0A1W2PN81 502 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 CHRNA7P36544 502 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 SPNS3Q6ZMD2 512 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 BEND2Q8NDZ0 799 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 Q8WTZ3 238 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 TPSG1Q9NRR2 321 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 SLC45A2Q9UMX9 530 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 COL6A6A6NMZ7 2263 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 IGKV1OR2-108A0A075B7D4 117 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 LINC00869P0C866 280 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 CD69Q07108 199 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 GAMTQ14353 236 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 TMEM241Q24JQ0 296 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 MRGPRG-AS1Q2M3A8 158 aa17.03■□□□□ 0.32
CCDC88B-208ENST00000492980 BUB1B-PAK6H3BSN5 160 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 DLL1O00548 723 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 ENSAO43768 121 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 TSPAN9O75954 239 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 CXorf1O96002 111 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 LGALS7P47929 136 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 UBE2G2P60604 165 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 WT1-ASQ06250 92 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 MLANAQ16655 118 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 SPATA31B1PQ5VZV4 182 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 LY6G5BQ8NDX9 201 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 SEPSECSQ9HD40 501 aaKnown RBP17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 TMEM242Q9NWH2 141 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 NCOR2Q9Y618 2525 aa17.02■□□□□ 0.32
CCDC88B-208ENST00000492980 RHOBP62745 196 aa17.02■□□□□ 0.31
CCDC88B-208ENST00000492980 KLF2Q9Y5W3 355 aaPredicted RBP17.02■□□□□ 0.31
CCDC88B-208ENST00000492980 URGCP-MRPS24S4R325 110 aa17.02■□□□□ 0.31
CCDC88B-208ENST00000492980 C22orf46C9J442 243 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 CXCL1P09341 107 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 NPPCP23582 126 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 COX7A1P24310 79 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 ATP5G3P48201 142 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 NEU4Q8WWR8 484 aaPredicted RBP17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 TIMD4Q96H15 378 aa17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 TPRP12270 2363 aaKnown RBP17.01■□□□□ 0.31
CCDC88B-208ENST00000492980 IGHV1-3A0A0C4DH29 117 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 ADIRFQ15847 76 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 OR4P4Q8NGL7 312 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 HRNRQ86YZ3 2850 aaPredicted RBP17■□□□□ 0.31
CCDC88B-208ENST00000492980 LIPFP07098 398 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 RND2P52198 227 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 RPL23P62829 140 aaKnown RBP17■□□□□ 0.31
CCDC88B-208ENST00000492980 SLC16A13Q7RTY0 426 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 DTX2Q86UW9 622 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 CACNG8Q8WXS5 425 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 ONECUT1Q9UBC0 465 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 LRBAP50851 2863 aa17■□□□□ 0.31
CCDC88B-208ENST00000492980 PDE6DO43924 150 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 OR10J1P30954 320 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 GPX4P36969 197 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 CST9LP1Q5W188 147 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 C1QL4Q86Z23 238 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 TEX45Q8NA69 505 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 INSIG2Q9Y5U4 225 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 TGIF2-C20orf24A0A0A6YYL0 155 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 CLDN34H7C241 214 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 CRYGBP07316 175 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 OR51G1Q8NGK1 321 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 CTDSP1Q9GZU7 261 aa16.99■□□□□ 0.31
CCDC88B-208ENST00000492980 A0A1W2PPI3 338 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 A0A1W2PPR1 153 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 CNTFRP26992 372 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 GCHFRP30047 84 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 GNB1P62873 340 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 SLC35E1Q96K37 410 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 SSX3Q99909 188 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 AMMECR1Q9Y4X0 333 aaPredicted RBP16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 ITPR1Q14643 2758 aa16.98■□□□□ 0.31
CCDC88B-208ENST00000492980 PNKDQ8N490 385 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 OR2T6Q8NHC8 308 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 NANPQ8TBE9 248 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 RNASEH2CQ8TDP1 164 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 DCHS2Q6V1P9 2916 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 F6UZH7 168 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 LY6LH3BQJ8 138 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 GATA2P23769 480 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 RPS10P46783 165 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 KIAA0141Q14154 515 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 PRSS8Q16651 343 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 TXNDC17Q9BRA2 123 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 CHODLQ9H9P2 273 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 PRELID1Q9Y255 219 aa16.97■□□□□ 0.31
CCDC88B-208ENST00000492980 FOXH1O75593 365 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 SUB1P53999 127 aaKnown RBP eCLIP16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 PSG5Q15238 335 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 FAM78BQ5VT40 261 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 MIR17HGQ75NE6 70 aa16.96■□□□□ 0.31
CCDC88B-208ENST00000492980 MMD2Q8IY49 270 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms