RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 PRR13Q9NZ81 148 aa12.53□□□□□ -0.4
MSH5-SAPCD1-206ENST00000491552 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SEC14L6B5MCN3 397 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ST8SIA3O43173 380 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 NDUFB6O95139 128 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 TRBV12-3P01733 135 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SRPXP78539 464 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 C9orf66Q5T8R8 295 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CENPSQ8N2Z9 138 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 EEF1AKMT3Q96AZ1 226 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PLEKHA3Q9HB20 300 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 THYN1Q9P016 225 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 DMRT1Q9Y5R6 373 aa12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 F11RQ9Y624 299 aaKnown RBP12.52□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 IFNA17P01571 189 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 BTCP35070 178 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SLC25A24Q6NUK1 477 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 LGI3Q8N145 548 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SLC35G3Q8N808 338 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 GPR146Q96CH1 333 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CXorf58Q96LI9 332 aa12.51□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PIGBOS1A0A0B4J2F0 54 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 MFSD2BA6NFX1 497 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 WIPF1O43516 503 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 IGHV3-23P01764 117 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 VAMP1P23763 118 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 RPEL1Q2QD12 228 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SPINK9Q5DT21 86 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 Q6ZRM9 215 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 OR2C3Q8N628 320 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 OR1L6Q8NGR2 347 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CCDC140Q96MF4 163 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 WDR12Q9GZL7 423 aaKnown RBP12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CACNG5Q9UF02 275 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 S4R3C0 116 aa12.5□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 TRBV7-1A0A0A6YYK4 115 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 A0A0B4J2A0 478 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 BMPR1BO00238 502 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PLA2G10O15496 165 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 LYRM1O43325 122 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SFT2D2O95562 160 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 HOXA1P49639 335 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 MFAP2P55001 183 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 UBE2MP61081 183 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ERHP84090 104 aaKnown RBP12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 EGFEM1PQ0D2K5 195 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PPP1R1AQ13522 171 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 AARDQ4LEZ3 155 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ZNF114Q8NC26 417 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 OR1P1Q8NH06 330 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SHPKQ9UHJ6 478 aa12.49□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 DUXBA0A1W2PPF3 345 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 INS-IGF2F8WCM5 200 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PRB2P02812 416 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SULT1A3P0DMM9 295 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SULT1A4P0DMN0 295 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 INSL3P51460 131 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 KRTAP10-11P60412 298 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 KLF5Q13887 457 aaPredicted RBP12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ZNF846Q147U1 533 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ANKRD55Q3KP44 614 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ACSM6Q6P461 480 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 LYZL2Q7Z4W2 148 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 OR52E5Q8NH55 327 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 VN1R17PQ8TDU5 208 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ENY2Q9NPA8 101 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 FLVCR2Q9UPI3 526 aa12.48□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PPP5D1E7EU14 171 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SAP30O75446 220 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ARL3P36405 182 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SYNJ2BPP57105 145 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SPCS3P61009 180 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 TATDN3Q17R31 274 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 NMSQ5H8A3 153 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CLEC19AQ6UXS0 136 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 REC114Q7Z4M0 266 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 LRTM2Q8N967 370 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ZNF502Q8TBZ5 544 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ELOVL1Q9BW60 279 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 AURKAIP1Q9NWT8 199 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 MEGF8Q7Z7M0 2845 aa12.47□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 GGCTO75223 188 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SNCAP37840 140 aa12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 SMCO1Q147U7 214 aa12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 PDLIM3Q53GG5 364 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 OR9G4Q8NGQ1 327 aa12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 MISP3Q96FF7 219 aa12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 ZMAT5Q9UDW3 170 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 CACFD1Q9UGQ2 172 aa12.46□□□□□ -0.41
MSH5-SAPCD1-206ENST00000491552 IGHV3-21A0A0B4J1V1 117 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 C9orf170A2RU37 121 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 K7EIM0 57 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 HLA-AP01891 365 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 OR4E1P0C645 316 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 GPR183P32249 361 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 OR4C12Q96R67 309 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 C20orf85Q9H1P6 137 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 C21orf62Q9NYP8 219 aa12.45□□□□□ -0.42
MSH5-SAPCD1-206ENST00000491552 A0A1B0GU03 582 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms