RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	RFX2	P48378	723 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	NEDD8	Q15843	81 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905		Q56UQ5	140 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	DHRS11	Q6UWP2	260 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	CADM3	Q8N126	398 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	RNF183	Q96D59	192 aa		13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	DGCR14	Q96DF8	476 aa	Known RBP	13.63	□□□□□ -0.23
HDAC6-231	ENST00000488905	VPS13D	Q5THJ4	4388 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	C15orf62	A8K5M9	175 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	SNAPC5	O75971	98 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	ATP6V1G2	O95670	118 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	CTSD	P07339	412 aa	Predicted RBP	13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	RPL35A	P18077	110 aa	Known RBP	13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	TAS2R46	P59540	309 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	UBE2NL	Q5JXB2	153 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	CMTM1	Q8IZ96	169 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	TSPAN14	Q8NG11	270 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	OR5H2	Q8NGV7	314 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	OR5B3	Q8NH48	314 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	GALNT14	Q96FL9	552 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	PRND	Q9UKY0	176 aa		13.62	□□□□□ -0.23
HDAC6-231	ENST00000488905	C15orf61	A6NNL5	157 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	PMP2	P02689	132 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	TMEM69	Q5SWH9	247 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	TMEM217	Q8N7C4	229 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	S100A16	Q96FQ6	103 aa	Known RBP	13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	TMEM56	Q96MV1	263 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	TMEM14B	Q9NUH8	114 aa		13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	KLK5	Q9Y337	293 aa	Predicted RBP	13.61	□□□□□ -0.23
HDAC6-231	ENST00000488905	HECTD4	Q9Y4D8	3996 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	DBX1	A6NMT0	343 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	GPR31	O00270	319 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	NAT1	P18440	290 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	TGFBR1	P36897	503 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	TAS2R20	P59543	309 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	REL	Q04864	619 aa	Predicted RBP	13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	CROCCP3	Q8IVE0	287 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	OR1P1	Q8NH06	330 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	ZNF414	Q96IQ9	312 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	RNF2	Q99496	336 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	TSC22D3	Q99576	134 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	MAP6D1	Q9H9H5	199 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	FKBP11	Q9NYL4	201 aa		13.6	□□□□□ -0.23
HDAC6-231	ENST00000488905	IGHV7-4-1	A0A0J9YVY3	117 aa		13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	CTSG	P08311	255 aa		13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	FCGR2B	P31994	310 aa	Predicted RBP	13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	APRG1	Q8IVJ8	170 aa		13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	SAMD12	Q8N8I0	201 aa		13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	C6orf62	Q9GZU0	229 aa	Predicted RBP	13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	SMPX	Q9UHP9	88 aa		13.59	□□□□□ -0.23
HDAC6-231	ENST00000488905	CHEK1	O14757	476 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	NUPL2	O15504	423 aa	Known RBP	13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	HRH1	P35367	487 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	OR6F1	Q8NGZ6	308 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	MISP3	Q96FF7	219 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	OR10C1	Q96KK4	312 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	RHPN1-AS1	Q9BWJ2	59 aa		13.58	□□□□□ -0.24
HDAC6-231	ENST00000488905	ZNF124	Q15973	351 aa		13.57	□□□□□ -0.24
HDAC6-231	ENST00000488905	KCTD21	Q4G0X4	260 aa		13.57	□□□□□ -0.24
HDAC6-231	ENST00000488905	PHLDA2	Q53GA4	152 aa		13.57	□□□□□ -0.24
HDAC6-231	ENST00000488905	TMEM116	Q8NCL8	245 aa		13.57	□□□□□ -0.24
HDAC6-231	ENST00000488905	FAM212B	Q9NTI7	297 aa	Predicted RBP	13.57	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGHV3-49	A0A0A0MS15	119 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905		I3L2K1	104 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	YIF1A	O95070	293 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	PRSS3	P35030	304 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	MFAP4	P55083	255 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	ZNF114	Q8NC26	417 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	SLC25A46	Q96AG3	418 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	SEC22A	Q96IW7	307 aa		13.56	□□□□□ -0.24
HDAC6-231	ENST00000488905	HLA-DMA	P28067	261 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	S100G	P29377	79 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	RPS19	P39019	145 aa	Known RBP	13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	TFPI2	P48307	235 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	PRCD	Q00LT1	54 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	TBC1D26	Q86UD7	250 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	GATAD1	Q8WUU5	269 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	TXN2	Q99757	166 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	NXF2	Q9GZY0	626 aa	Known RBP	13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	CSTL1	Q9H114	145 aa		13.55	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGKV3-7	A0A075B6H7	116 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	MPTX1	A8MV57	137 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	MT-CO2	P00403	227 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGKV1-39	P01597	117 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGKV1D-39	P04432	117 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	CMC4	P56277	68 aa	Predicted RBP	13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	LPCAT3	Q6P1A2	487 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	H2BFWT	Q7Z2G1	175 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	LYSMD2	Q8IV50	215 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	RPP25L	Q8N5L8	163 aa	Known RBP	13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	OR4A16	Q8NH70	328 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	CMTM3	Q96MX0	182 aa		13.54	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGHV3OR16-13	A0A075B7E8	117 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	TRAV14DV4	A0A0A6YYC5	116 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGHV3-74	A0A0B4J1X5	117 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	GNG7	O60262	68 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	IGHV3-48	P01763	117 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	TSPAN5	P62079	268 aa		13.53	□□□□□ -0.24
HDAC6-231	ENST00000488905	FAM90A2P	Q658T7	463 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms