RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 CCDC190Q86UF4 302 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 Q8N1Y9 231 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 CCDC71LQ8N9Z2 235 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 GLYATL2Q8WU03 294 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 ZNF414Q96IQ9 312 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 TSC22D3Q99576 134 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 TMEM222Q9H0R3 208 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 RABL2AQ9UBK7 228 aaPredicted RBP10.54□□□□□ -0.72
SYNE1-226ENST00000488376 RABL2BQ9UNT1 228 aa10.54□□□□□ -0.72
SYNE1-226ENST00000488376 TRBV7-1A0A0A6YYK4 115 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 OR2T8A6NH00 312 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 C2orf70A6NJV1 201 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 ST8SIA3O43173 380 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 IGHV3-48P01763 117 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 AKR1C2P52895 323 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 HSPE1P61604 102 aaKnown RBP10.53□□□□□ -0.72
SYNE1-226ENST00000488376 PRCDQ00LT1 54 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 TATDN3Q17R31 274 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 THOC7Q6I9Y2 204 aaKnown RBP10.53□□□□□ -0.72
SYNE1-226ENST00000488376 HSD17B13Q7Z5P4 300 aaPredicted RBP10.53□□□□□ -0.72
SYNE1-226ENST00000488376 OR2C3Q8N628 320 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 SCARB1Q8WTV0 552 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 CXorf58Q96LI9 332 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 PRRT1Q99946 306 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 NAA60Q9H7X0 242 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 MCUBQ9NWR8 336 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 SLC2A8Q9NY64 477 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 FKBP11Q9NYL4 201 aa10.53□□□□□ -0.72
SYNE1-226ENST00000488376 C14orf166Q9Y224 244 aaKnown RBP10.53□□□□□ -0.72
SYNE1-226ENST00000488376 TEX13DA0A0J9YY54 714 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-226ENST00000488376 ZNF320A2RRD8 509 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 TMEM213A2RRL7 107 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 CRYM-AS1A6NIL9 109 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 ZNF701M0R085 212 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-226ENST00000488376 FOLR2P14207 255 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 SURF2Q15527 256 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-226ENST00000488376 CD300EQ496F6 205 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-226ENST00000488376 TM4SF20Q53R12 229 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 FAM209BQ5JX69 171 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 GPHB5Q86YW7 130 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 SELENOHQ8IZQ5 122 aaKnown RBP10.52□□□□□ -0.73
SYNE1-226ENST00000488376 Q8N402 240 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 VN1R17PQ8TDU5 208 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 TMEM56Q96MV1 263 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 CHRDL1Q9BU40 450 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 SIGLEC8Q9NYZ4 499 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 PEMTQ9UBM1 199 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 SMAD5-AS1Q9Y6J3 95 aa10.52□□□□□ -0.73
SYNE1-226ENST00000488376 IGHV3OR16-8A0A075B7F1 116 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 LGALS9O00182 355 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 CDS2O95674 445 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 FRMD6-AS1P0C7T7 363 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 ADMP35318 185 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 ETV6P41212 452 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 DEFB114Q30KQ6 69 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 SBSPONQ8IVN8 264 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 OR1P1Q8NH06 330 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 MISP3Q96FF7 219 aa10.51□□□□□ -0.73
SYNE1-226ENST00000488376 ZNF785A8K8V0 405 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 I3L2K1 104 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 TGOLN2O43493 480 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 CBLN1P23435 193 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 S100A5P33763 92 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 SUPT4H1P63272 117 aaKnown RBP10.5□□□□□ -0.73
SYNE1-226ENST00000488376 DCTN2Q13561 401 aaKnown RBP10.5□□□□□ -0.73
SYNE1-226ENST00000488376 PLET1Q6UQ28 207 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 UBAC2Q8NBM4 344 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 GPR146Q96CH1 333 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 SRRQ9GZT4 340 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 PLEKHA3Q9HB20 300 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 C21orf62Q9NYP8 219 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 THYN1Q9P016 225 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 MLXQ9UH92 298 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 DNAH9Q9NYC9 4486 aa10.5□□□□□ -0.73
SYNE1-226ENST00000488376 A8MWP6 167 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 NXPH3O95157 252 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 IFNA17P01571 189 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 IGHV4-30-4P0DP06 118 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 AKR1C4P17516 323 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 TMEM187Q14656 261 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 FAM106AQ4KMX7 169 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 TMEM268Q5VZI3 342 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 LCN12Q6JVE5 192 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 TOMM5Q8N4H5 51 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 SLC35G3Q8N808 338 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 ZNF114Q8NC26 417 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 RNASE11Q8TAA1 199 aaKnown RBP10.49□□□□□ -0.73
SYNE1-226ENST00000488376 DYNLRB2Q8TF09 96 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 RBPMSQ93062 196 aaKnown RBP10.49□□□□□ -0.73
SYNE1-226ENST00000488376 WDR89Q96FK6 387 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-226ENST00000488376 SDHCQ99643 169 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-226ENST00000488376 ZNF436Q9C0F3 470 aaPredicted RBP10.49□□□□□ -0.73
SYNE1-226ENST00000488376 SCP2D1Q9UJQ7 156 aa10.49□□□□□ -0.73
SYNE1-226ENST00000488376 B3GALNT1O75752 331 aa10.48□□□□□ -0.73
SYNE1-226ENST00000488376 MT-CO2P00403 227 aa10.48□□□□□ -0.73
SYNE1-226ENST00000488376 CTSGP08311 255 aa10.48□□□□□ -0.73
SYNE1-226ENST00000488376 RNASE2P10153 161 aaKnown RBP10.48□□□□□ -0.73
SYNE1-226ENST00000488376 BAK1Q16611 211 aa10.48□□□□□ -0.73
SYNE1-226ENST00000488376 Q56UQ5 140 aa10.48□□□□□ -0.73
SYNE1-226ENST00000488376 BTNL8Q6UX41 500 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms