RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 DEFB114Q30KQ6 69 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 CLEC19AQ6UXS0 136 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 OR51H1Q8NH63 302 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 ZFAND1Q8TCF1 268 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 DYNLRB2Q8TF09 96 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 SPATA25Q9BR10 227 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 AIFM2Q9BRQ8 373 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 EDA2RQ9HAV5 297 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 PLEKHA3Q9HB20 300 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 STARD9Q9P2P6 4700 aa9.29□□□□□ -0.92
SDC3-204ENST00000487984 RYR2Q92736 4967 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 IGLV11-55A0A075B6I3 123 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 IGLC7A0M8Q6 106 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 MFSD2BA6NFX1 497 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 ZNF785A8K8V0 405 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 INMT-MINDY4F8WBC2 141 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 LGALS9O00182 355 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 UPK2O00526 184 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 PRAF2O60831 178 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 S1PR2O95136 353 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 RLN1P04808 185 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 DEFA4P12838 97 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 PGAM2P15259 253 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 HIST1H1BP16401 226 aaKnown RBP9.28□□□□□ -0.92
SDC3-204ENST00000487984 GNRHRP30968 328 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 CD81P60033 236 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 AADACL3Q5VUY0 350 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 Q6ZNX1 250 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 GPHB5Q86YW7 130 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 EEF1AKMT3Q96AZ1 226 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 NEURL2Q9BR09 285 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 MARVELD1Q9BSK0 173 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 C20orf85Q9H1P6 137 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 TMEM140Q9NV12 185 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 NUDT15Q9NV35 164 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 C14orf166Q9Y224 244 aaKnown RBP9.28□□□□□ -0.92
SDC3-204ENST00000487984 TENM2Q9NT68 2774 aa9.28□□□□□ -0.92
SDC3-204ENST00000487984 LYSTQ99698 3801 aa9.27□□□□□ -0.92
SDC3-204ENST00000487984 CD7P09564 240 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 UCP3P55916 312 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 ZFAND6Q6FIF0 208 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 LHFPL1Q86WI0 220 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 DMBX1Q8NFW5 382 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 CD300LFQ8TDQ1 290 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 CACNG8Q8WXS5 425 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 MOB3AQ96BX8 217 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 WDR89Q96FK6 387 aaPredicted RBP9.27□□□□□ -0.93
SDC3-204ENST00000487984 WFDC10AQ9H1F0 79 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 PLEKHA2Q9HB19 425 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 GPN1Q9HCN4 374 aaPredicted RBP9.27□□□□□ -0.93
SDC3-204ENST00000487984 ZC4H2Q9NQZ6 224 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 TECRQ9NZ01 308 aaKnown RBP9.27□□□□□ -0.93
SDC3-204ENST00000487984 COMMD9Q9P000 198 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 SELENOKQ9Y6D0 94 aa9.27□□□□□ -0.93
SDC3-204ENST00000487984 TRAV6A0A075B6T7 132 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 TRBV7-1A0A0A6YYK4 115 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 TMEM213A2RRL7 107 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 A8MWP6 167 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 CLEC3BP05452 202 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 FGF2P09038 288 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 RPA2P15927 270 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 UBE2MP61081 183 aaKnown RBP9.26□□□□□ -0.93
SDC3-204ENST00000487984 GUCA2BQ16661 112 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 FAM106AQ4KMX7 169 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 LINC00322Q6ZN03 302 aaPredicted RBP9.26□□□□□ -0.93
SDC3-204ENST00000487984 SLC38A6Q8IZM9 456 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 DEFB125Q8N687 156 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 OR13C8Q8NGS7 320 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 MARCH1Q8TCQ1 289 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 ZNF486Q96H40 463 aaPredicted RBP9.26□□□□□ -0.93
SDC3-204ENST00000487984 CXorf58Q96LI9 332 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 SRSF8Q9BRL6 282 aaKnown RBP9.26□□□□□ -0.93
SDC3-204ENST00000487984 QTRT1Q9BXR0 403 aaKnown RBP9.26□□□□□ -0.93
SDC3-204ENST00000487984 COMMD5Q9GZQ3 224 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 RETNQ9HD89 108 aa9.26□□□□□ -0.93
SDC3-204ENST00000487984 ZNF320A2RRD8 509 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 MARCH11A6NNE9 402 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 PGLYRP1O75594 196 aaPredicted RBP9.25□□□□□ -0.93
SDC3-204ENST00000487984 IL5P05113 134 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 CTSDP07339 412 aaPredicted RBP9.25□□□□□ -0.93
SDC3-204ENST00000487984 CBLN1P23435 193 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 UNQ9165/PRO28630Q6UXU0 137 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 TMED4Q7Z7H5 227 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 CMTM1Q8IZ96 169 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 CCDC71LQ8N9Z2 235 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 OR10W1Q8NGF6 305 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 ZNF502Q8TBZ5 544 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 FXYD6Q9H0Q3 95 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 MLXQ9UH92 298 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 GPR132Q9UNW8 380 aa9.25□□□□□ -0.93
SDC3-204ENST00000487984 PIGBOS1A0A0B4J2F0 54 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 TEX50A0A1B0GTY4 177 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 RBMY1BA6NDE4 496 aaKnown RBP9.24□□□□□ -0.93
SDC3-204ENST00000487984 RBMY1EA6NEQ0 496 aaKnown RBP9.24□□□□□ -0.93
SDC3-204ENST00000487984 OR11H12B2RN74 326 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 RBMY1DP0C7P1 496 aaKnown RBP9.24□□□□□ -0.93
SDC3-204ENST00000487984 F2RP25116 425 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 GPR183P32249 361 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 ERVK-16P61578 105 aa9.24□□□□□ -0.93
SDC3-204ENST00000487984 WT1-ASQ06250 92 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms