RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 INSL3P51460 131 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 SPCS3P61009 180 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 SUPT4H1P63272 117 aaKnown RBP11.32□□□□□ -0.6
LIMS3-205ENST00000487150 WT1-ASQ06250 92 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 SAMD5Q5TGI4 173 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 LRTM2Q8N967 370 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 COQ8AQ8NI60 647 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 DUX3Q96PT4 197 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 GAR1Q9NY12 217 aaKnown RBP11.32□□□□□ -0.6
LIMS3-205ENST00000487150 FBN3Q75N90 2809 aa11.32□□□□□ -0.6
LIMS3-205ENST00000487150 A0A0B4J293 547 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 CORTO00230 105 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 ST8SIA3O43173 380 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 HLA-AP01891 365 aaKnown RBP11.31□□□□□ -0.6
LIMS3-205ENST00000487150 PRH1P02810 166 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 REG1AP05451 166 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 SNCAP37840 140 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 SUB1P53999 127 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIMS3-205ENST00000487150 RPEL1Q2QD12 228 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 PDLIM3Q53GG5 364 aaPredicted RBP11.31□□□□□ -0.6
LIMS3-205ENST00000487150 C9orf66Q5T8R8 295 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 OR2C3Q8N628 320 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 OR10W1Q8NGF6 305 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 LHFPL5Q8TAF8 219 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 VN1R17PQ8TDU5 208 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 FANCD2OSQ96PS1 177 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 CACNG5Q9UF02 275 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 TMED3Q9Y3Q3 217 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 TNCP24821 2201 aa11.31□□□□□ -0.6
LIMS3-205ENST00000487150 IGHV4OR15-8A0A075B7B6 117 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 A0A087WW49 117 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.3□□□□□ -0.6
LIMS3-205ENST00000487150 A0A1B0GU03 582 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 DBX1A6NMT0 343 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 OVOL1O14753 267 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 SLC25A6P12236 298 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 HOXD3P31249 432 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-205ENST00000487150 BTCP35070 178 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 DEFA1P59665 94 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 DEFA3P59666 94 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 ASAH1Q13510 395 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 PPP1R1AQ13522 171 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 SMCO1Q147U7 214 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 C4orf46Q504U0 113 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 NMSQ5H8A3 153 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 REC114Q7Z4M0 266 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 NOXA1Q86UR1 476 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 ELOVL1Q9BW60 279 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 ALX4Q9H161 411 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-205ENST00000487150 C20orf85Q9H1P6 137 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 PLXNB1O43157 2135 aa11.3□□□□□ -0.6
LIMS3-205ENST00000487150 FAM240BA0A1B0GVZ2 78 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 ANKRD34BA5PLL1 514 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 PLA2G10O15496 165 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 SCGB2A1O75556 95 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 IGLL1P15814 213 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 IZUMO4Q1ZYL8 232 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 KPRPQ5T749 579 aaPredicted RBP11.29□□□□□ -0.6
LIMS3-205ENST00000487150 SLC25A24Q6NUK1 477 aa11.29□□□□□ -0.6
LIMS3-205ENST00000487150 A0A0G2JRQ6 117 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 C9orf170A2RU37 121 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 SEC14L6B5MCN3 397 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 WIPF1O43516 503 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 GGCTO75223 188 aaKnown RBP11.28□□□□□ -0.6
LIMS3-205ENST00000487150 LY86O95711 162 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 IFNA21P01568 189 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 TCRBP04435 133 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 OR4E1P0C645 316 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 DHRS2Q13268 280 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 LYG2Q86SG7 212 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 C1QL4Q86Z23 238 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 ENKURQ8TC29 256 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 GPR146Q96CH1 333 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 HIPK2Q9H2X6 1198 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 NUDT15Q9NV35 164 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 PEMTQ9UBM1 199 aa11.28□□□□□ -0.6
LIMS3-205ENST00000487150 CEBPZOSA8MTT3 80 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 FAM90A26D6RGX4 464 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 G3V4G9 280 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 NDUFB8O95169 186 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 HTR2BP41595 481 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 SLURP1P55000 103 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 DEFA5Q01523 94 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 BEAN1Q3B7T3 259 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 OXLD1Q5BKU9 147 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 SPSB3Q6PJ21 355 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 LYZL2Q7Z4W2 148 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 OR1S1Q8NH92 325 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 DCUN1D4Q92564 292 aa11.27□□□□□ -0.61
LIMS3-205ENST00000487150 RPS10-NUDT3A0A1W2PQS6 291 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 MED6O75586 246 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 ARL3P36405 182 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 ATP5IP56385 69 aaPredicted RBP11.26□□□□□ -0.61
LIMS3-205ENST00000487150 TNFRSF9Q07011 255 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 DCTN2Q13561 401 aaKnown RBP11.26□□□□□ -0.61
LIMS3-205ENST00000487150 ANKRD55Q3KP44 614 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 C19orf35Q6ZS72 473 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 ZNF502Q8TBZ5 544 aa11.26□□□□□ -0.61
LIMS3-205ENST00000487150 DLX4Q92988 240 aaPredicted RBP11.26□□□□□ -0.61
LIMS3-205ENST00000487150 MISP3Q96FF7 219 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms