RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 OR51B2Q9Y5P1 312 aa13.39□□□□□ -0.27
VIM-205ENST00000485947 PSMB11A5LHX3 300 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 SSSCA1O60232 199 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 NXPH3O95157 252 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 SLC35B1P78383 322 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 HNF4GQ14541 408 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 PLGLAQ15195 96 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 PRSS8Q16651 343 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 FBLN7Q53RD9 439 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 C9orf152Q5JTZ5 239 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 OR1L8Q8NGR8 309 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 DTD1Q8TEA8 209 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 CLCC1Q96S66 551 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 COMMD5Q9GZQ3 224 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 MAGT1Q9H0U3 335 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 FBXL15Q9H469 300 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 RBKSQ9H477 322 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 ZNF430Q9H8G1 570 aaPredicted RBP13.38□□□□□ -0.27
VIM-205ENST00000485947 ZNF580Q9UK33 172 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 WSB1Q9Y6I7 421 aa13.38□□□□□ -0.27
VIM-205ENST00000485947 CEBPZOSA8MTT3 80 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 AP4M1O00189 453 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 F2RL1P55085 397 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 RPL23AP62750 156 aaKnown RBP13.37□□□□□ -0.27
VIM-205ENST00000485947 PRCDQ00LT1 54 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 OR2F1Q13607 317 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 ZNF345Q14585 488 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 C5orf64Q2M2E5 130 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 MRGPRG-AS1Q2M3A8 158 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 BEAN1Q3B7T3 259 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 TCTEX1D4Q5JR98 221 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 SLC35E3Q7Z769 313 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 INO80EQ8NBZ0 244 aaPredicted RBP13.37□□□□□ -0.27
VIM-205ENST00000485947 GRPEL2Q8TAA5 225 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 SMIM8Q96KF7 97 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 TPSG1Q9NRR2 321 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 PLSCR3Q9NRY6 295 aa13.37□□□□□ -0.27
VIM-205ENST00000485947 TEX50A0A1B0GTY4 177 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 A0A1W2PN81 502 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 NCBP2LA6PVI3 153 aaKnown RBP13.36□□□□□ -0.27
VIM-205ENST00000485947 ARPC5O15511 151 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 TSC22D2O75157 780 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 ACTL6BO94805 426 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 PF4V1P10720 104 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 CHRNA7P36544 502 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 NKX2-5P52952 324 aaPredicted RBP13.36□□□□□ -0.27
VIM-205ENST00000485947 ACOT7LQ6ZUV0 252 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 AQP10Q96PS8 301 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 MFFQ9GZY8 342 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 ENY2Q9NPA8 101 aa13.36□□□□□ -0.27
VIM-205ENST00000485947 LYRM2Q9NU23 88 aaPredicted RBP13.36□□□□□ -0.27
VIM-205ENST00000485947 A0A0D9SG52 128 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 INS-IGF2F8WCM5 200 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 C4BPBP20851 252 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 HOXA1P49639 335 aaPredicted RBP13.35□□□□□ -0.27
VIM-205ENST00000485947 TNXAQ16473 311 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 MRPL41Q8IXM3 137 aaKnown RBP13.35□□□□□ -0.27
VIM-205ENST00000485947 C9orf62Q8N4C0 152 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 OR2C3Q8N628 320 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 Q8N9W7 124 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 RASL11BQ9BPW5 248 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 SLC25A31Q9H0C2 315 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 HIPK2Q9H2X6 1198 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 PLEKHA3Q9HB20 300 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 PSENENQ9NZ42 101 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 TNCP24821 2201 aa13.35□□□□□ -0.27
VIM-205ENST00000485947 KMT2CQ8NEZ4 4911 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 RNF222A6NCQ9 220 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 SCAF4O95104 1147 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 IAPPP10997 89 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 RPL12P30050 165 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 RPL27AP46776 148 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 PAX9P55771 341 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 RPP30P78346 268 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 TEX38Q6PEX7 206 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 STPG2Q8N412 459 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 SRSF8Q9BRL6 282 aaKnown RBP13.34□□□□□ -0.27
VIM-205ENST00000485947 NDUFA4L2Q9NRX3 87 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 PLXNB1O43157 2135 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 NOTCH3Q9UM47 2321 aa13.34□□□□□ -0.27
VIM-205ENST00000485947 SH2D7A6NKC9 451 aaPredicted RBP13.33□□□□□ -0.28
VIM-205ENST00000485947 G3V4G9 280 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 TMEM50AO95807 157 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 CA2P00918 260 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 HLA-DRB1P01911 266 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 PF4P02776 101 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 CXCL2P19875 107 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 CD33P20138 364 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 CAV2P51636 162 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 BAXQ07812 192 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 PJVKQ0ZLH3 352 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 LGALSLQ3ZCW2 172 aaPredicted RBP13.33□□□□□ -0.28
VIM-205ENST00000485947 HSD17B13Q7Z5P4 300 aaPredicted RBP13.33□□□□□ -0.28
VIM-205ENST00000485947 KCNRGQ8N5I3 272 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 RCC1LQ96I51 464 aaKnown RBP13.33□□□□□ -0.28
VIM-205ENST00000485947 GPR61Q9BZJ8 451 aa13.33□□□□□ -0.28
VIM-205ENST00000485947 HEYLQ9NQ87 328 aaPredicted RBP13.33□□□□□ -0.28
VIM-205ENST00000485947 MYOD1P15172 320 aa13.32□□□□□ -0.28
VIM-205ENST00000485947 ATP5IP56385 69 aaPredicted RBP13.32□□□□□ -0.28
VIM-205ENST00000485947 SPINK9Q5DT21 86 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms