RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 RNASE8Q8TDE3 154 aaKnown RBP10.97□□□□□ -0.65
USP40-214ENST00000483519 C1orf159Q96HA4 380 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 TCF19Q9Y242 345 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 IBA57Q5T440 356 aaKnown RBP10.97□□□□□ -0.65
USP40-214ENST00000483519 MRPL54Q6P161 138 aaKnown RBP10.97□□□□□ -0.65
USP40-214ENST00000483519 ACP7Q6ZNF0 438 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 OBP2BQ9NPH6 170 aa10.97□□□□□ -0.65
USP40-214ENST00000483519 IGHV2-26A0A0B4J1V2 119 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 SMIM27A0A1W2PRY6 76 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 K7EP13 123 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 SP1P08047 785 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 FTH1P19P0C7X4 201 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 NPY1RP25929 384 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 MAGEA5P43359 124 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 HINT1P49773 126 aaPredicted RBP10.96□□□□□ -0.65
USP40-214ENST00000483519 Q6ZR03 302 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 FAM19A2Q8N3H0 131 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 PNKDQ8N490 385 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 SLC25A40Q8TBP6 338 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 TMEM140Q9NV12 185 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 WDFY4Q6ZS81 3184 aa10.96□□□□□ -0.65
USP40-214ENST00000483519 CEP250Q9BV73 2442 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 SPAARA0A1B0GVQ0 90 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 SELENOVP59797 346 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 PRR20EP86478 221 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 PRR20CP86479 221 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 PRR20DP86480 221 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 PRR20BP86481 221 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 PRR20AP86496 221 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 ADIPOQQ15848 244 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 ALKBH6Q3KRA9 238 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 MIR17HGQ75NE6 70 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 VKORC1L1Q8N0U8 176 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 TPRX1Q8N7U7 411 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 SLC24A4Q8NFF2 622 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 Q8TCH9 128 aa10.96□□□□□ -0.66
USP40-214ENST00000483519 ZNF331Q9NQX6 463 aaPredicted RBP10.96□□□□□ -0.66
USP40-214ENST00000483519 SERTM2A0A1B0GWG4 89 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 IZUMO1RA6ND01 250 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 M0R1X1 148 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 KIR2DS2P43631 304 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 RASL11AQ6T310 242 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 ZNF826PQ6ZT77 177 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 VASH2Q86V25 355 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 CXorf67Q86X51 503 aaPredicted RBP10.95□□□□□ -0.66
USP40-214ENST00000483519 S1PR3Q99500 378 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 ENY2Q9NPA8 101 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 TECRQ9NZ01 308 aaKnown RBP10.95□□□□□ -0.66
USP40-214ENST00000483519 PTPRBP23467 1997 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 FNDC10F2Z333 226 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 ACTL6BO94805 426 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 USF1P22415 310 aaPredicted RBP10.95□□□□□ -0.66
USP40-214ENST00000483519 CDKN1BP46527 198 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 LTC4SQ16873 150 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 RTL8BQ17RB0 113 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 UNQ5815/PRO19632Q6UWF5 114 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 ATOH7Q8N100 152 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 TTTY12Q9BZ98 90 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 FAM234AQ9H0X4 552 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 PLEKHA3Q9HB20 300 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 SERTAD4Q9NUC0 356 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 GNG12Q9UBI6 72 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 CFAP54Q96N23 3096 aa10.95□□□□□ -0.66
USP40-214ENST00000483519 TRAV9-2A0A087WT02 112 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 IGHV1-69-2A0A0G2JMI3 117 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 C15orf65H3BRN8 121 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 CELA3BP08861 270 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 MGST1P10620 155 aaKnown RBP10.94□□□□□ -0.66
USP40-214ENST00000483519 SMIM21Q3B7S5 101 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 C18orf32Q8TCD1 76 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 CLEC7AQ9BXN2 247 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 COMMD5Q9GZQ3 224 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 HCFC1P51610 2035 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 TRAV3A0A0B4J244 114 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 IGHV2OR16-5A0A0B4J2B6 119 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 C15orf61A6NNL5 157 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 PROP1O75360 226 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 HSBP1O75506 76 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 IGFBP2P18065 325 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 ATP6V0BQ99437 205 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 ALKBH7Q9BT30 221 aaPredicted RBP10.94□□□□□ -0.66
USP40-214ENST00000483519 CXXC4Q9H2H0 198 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 JPT1Q9UK76 154 aa10.94□□□□□ -0.66
USP40-214ENST00000483519 LINC00869P0C866 280 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 TNFSF4P23510 183 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 PPOXP50336 477 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 TAS2R45P59539 299 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 C3AR1Q16581 482 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 ABHD17BQ5VST6 288 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 WIPF2Q8TF74 440 aaPredicted RBP10.93□□□□□ -0.66
USP40-214ENST00000483519 GCM1Q9NP62 436 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 CNOT1A5YKK6 2376 aaKnown RBP10.93□□□□□ -0.66
USP40-214ENST00000483519 OR7C2O60412 319 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 C11orf53Q8IXP5 236 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 TMEM251Q8N6I4 163 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 OR4S2Q8NH73 311 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 NABP2Q9BQ15 211 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 HES7Q9BYE0 225 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 ABI3Q9P2A4 366 aa10.93□□□□□ -0.66
USP40-214ENST00000483519 IGHV2-70DA0A0C4DH43 119 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms