RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 LHFPL5Q8TAF8 219 aa11.9□□□□□ -0.5
HMGA1-206ENST00000478214 GLYATL2Q8WU03 294 aa11.9□□□□□ -0.5
HMGA1-206ENST00000478214 SRRQ9GZT4 340 aa11.9□□□□□ -0.5
HMGA1-206ENST00000478214 F11RQ9Y624 299 aaKnown RBP11.9□□□□□ -0.5
HMGA1-206ENST00000478214 GGCTO75223 188 aaKnown RBP11.89□□□□□ -0.51
HMGA1-206ENST00000478214 OR2C1O95371 312 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 CDS2O95674 445 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 SPNP16150 400 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 FAUP35544 74 aaKnown RBP11.89□□□□□ -0.51
HMGA1-206ENST00000478214 PRCDQ00LT1 54 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 SPINK9Q5DT21 86 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 TMEM230Q96A57 120 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 CXorf58Q96LI9 332 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 SCGB3A2Q96PL1 93 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 THYN1Q9P016 225 aa11.89□□□□□ -0.51
HMGA1-206ENST00000478214 TRBV7-1A0A0A6YYK4 115 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 IGHV3-21A0A0B4J1V1 117 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 CYB5BO43169 146 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 IGLV1-51P01701 117 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 CLEC3BP05452 202 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 CSN3P07498 182 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 ARL3P36405 182 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 DHODHQ02127 395 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 SGPP2Q8IWX5 399 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 SELENOHQ8IZQ5 122 aaKnown RBP11.88□□□□□ -0.51
HMGA1-206ENST00000478214 OR2C3Q8N628 320 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 RNASE11Q8TAA1 199 aaKnown RBP11.88□□□□□ -0.51
HMGA1-206ENST00000478214 ZNF502Q8TBZ5 544 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 RRNAD1Q96FB5 475 aaKnown RBP11.88□□□□□ -0.51
HMGA1-206ENST00000478214 ZC4H2Q9NQZ6 224 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 DNAH9Q9NYC9 4486 aa11.88□□□□□ -0.51
HMGA1-206ENST00000478214 ST8SIA3O43173 380 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 AKR1C4P17516 323 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 GPR183P32249 361 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 Q6ZRM9 215 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 VN1R17PQ8TDU5 208 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 RBPMSQ93062 196 aaKnown RBP11.87□□□□□ -0.51
HMGA1-206ENST00000478214 PLEKHA3Q9HB20 300 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 PRR13Q9NZ81 148 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 LSM4Q9Y4Z0 139 aaKnown RBP11.87□□□□□ -0.51
HMGA1-206ENST00000478214 SORL1Q92673 2214 aa11.87□□□□□ -0.51
HMGA1-206ENST00000478214 K7EIM0 57 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 IFNA17P01571 189 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 TMEM187Q14656 261 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 BAK1Q16611 211 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 TMEM268Q5VZI3 342 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 ZNF57Q68EA5 555 aaPredicted RBP11.86□□□□□ -0.51
HMGA1-206ENST00000478214 OR1L6Q8NGR2 347 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 OR1P1Q8NH06 330 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 GALNT14Q96FL9 552 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 PEMTQ9UBM1 199 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 KCNIP3Q9Y2W7 256 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 TMEM56-RWDD3S4R434 201 aa11.86□□□□□ -0.51
HMGA1-206ENST00000478214 GP9P14770 177 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 SUPT4H1P63272 117 aaKnown RBP11.85□□□□□ -0.51
HMGA1-206ENST00000478214 ERHP84090 104 aaKnown RBP11.85□□□□□ -0.51
HMGA1-206ENST00000478214 ADAMTSL5Q6ZMM2 481 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 GPHB5Q86YW7 130 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 FAM219AQ8IW50 185 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 SLC35G3Q8N808 338 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 SCARB1Q8WTV0 552 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 DEDD2Q8WXF8 326 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 GPR146Q96CH1 333 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 SDHCQ99643 169 aaPredicted RBP11.85□□□□□ -0.51
HMGA1-206ENST00000478214 SIGLEC8Q9NYZ4 499 aa11.85□□□□□ -0.51
HMGA1-206ENST00000478214 EDN2P20800 178 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 DCTN2Q13561 401 aaKnown RBP11.84□□□□□ -0.51
HMGA1-206ENST00000478214 TRIQKQ629K1 86 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 PLET1Q6UQ28 207 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 TMED4Q7Z7H5 227 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 ZNF114Q8NC26 417 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 MISP3Q96FF7 219 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 PDCD10Q9BUL8 212 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 C21orf62Q9NYP8 219 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 CACNG5Q9UF02 275 aa11.84□□□□□ -0.51
HMGA1-206ENST00000478214 IGHV3-35A0A0C4DH35 117 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 ZNF320A2RRD8 509 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 OR2T8A6NH00 312 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 C2orf70A6NJV1 201 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 F8W735 103 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-206ENST00000478214 LGALS9O00182 355 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 INPP1P49441 399 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 HOXA1P49639 335 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-206ENST00000478214 FAM106AQ4KMX7 169 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 IL22RA2Q969J5 263 aa11.83□□□□□ -0.52
HMGA1-206ENST00000478214 SLC25A21Q9BQT8 299 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-206ENST00000478214 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.83□□□□□ -0.52
HMGA1-206ENST00000478214 LINC00854A0A1B0GVQ3 168 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 IZUMO1RA6ND01 250 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 INS-IGF2F8WCM5 200 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 I3L2K1 104 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 TGOLN2O43493 480 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 FOLR2P14207 255 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 SNCAP37840 140 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 CCR6P51684 374 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 AARDQ4LEZ3 155 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 UNQ9165/PRO28630Q6UXU0 137 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 LYZL2Q7Z4W2 148 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 UBAC2Q8NBM4 344 aa11.82□□□□□ -0.52
HMGA1-206ENST00000478214 B9D2Q9BPU9 175 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms