RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	CENPS	Q8N2Z9	138 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	NECAP1	Q8NC96	275 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	USMG5	Q96IX5	58 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	TMEM56	Q96MV1	263 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	C7orf50	Q9BRJ6	194 aa	Known RBP	7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	SRSF8	Q9BRL6	282 aa	Known RBP	7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	DMRT1	Q9Y5R6	373 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	TMEM56-RWDD3	S4R434	201 aa		7.92	□□□□□ -1.14
HDAC6-222	ENST00000478095	IGLV11-55	A0A075B6I3	123 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	ST8SIA3	O43173	380 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	LYRM1	O43325	122 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	NXPH3	O95157	252 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	IFNA17	P01571	189 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	HSPB1	P04792	205 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	OR8U8	P0C7N1	319 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	ANXA7	P20073	488 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	HSPE1	P61604	102 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	PRCD	Q00LT1	54 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	ZNF846	Q147U1	533 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	ANKRD55	Q3KP44	614 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	TMEM128	Q5BJH2	165 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	THOC7	Q6I9Y2	204 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	ZNF343	Q6P1L6	599 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	LYZL2	Q7Z4W2	148 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	DCUN1D4	Q92564	292 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	DLX4	Q92988	240 aa	Predicted RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	GPR146	Q96CH1	333 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	RCC1L	Q96I51	464 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	PDCD10	Q9BUL8	212 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	WDR12	Q9GZL7	423 aa	Known RBP	7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	CACNG5	Q9UF02	275 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	NBEAL1	Q6ZS30	2694 aa		7.91	□□□□□ -1.14
HDAC6-222	ENST00000478095	TNC	P24821	2201 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	IGHV3-21	A0A0B4J1V1	117 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	MFSD2B	A6NFX1	497 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	SFT2D2	O95562	160 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	PRB2	P02812	416 aa	Predicted RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	HIST1H1B	P16401	226 aa	Known RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	HOXD3	P31249	432 aa	Predicted RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	HOXA1	P49639	335 aa	Predicted RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	MFAP2	P55001	183 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	SRPX	P78539	464 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	DEFA6	Q01524	100 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	BEAN1	Q3B7T3	259 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	SLC25A24	Q6NUK1	477 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	ZNF429	Q86V71	674 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	FAM219A	Q8IW50	185 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	LGI3	Q8N145	548 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	IL22RA2	Q969J5	263 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	PLEKHA3	Q9HB20	300 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	RANGRF	Q9HD47	186 aa	Predicted RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	PEF1	Q9UBV8	284 aa	Known RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	TBC1D24	Q9ULP9	559 aa		7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	F11R	Q9Y624	299 aa	Known RBP	7.9	□□□□□ -1.14
HDAC6-222	ENST00000478095	CMYA5	Q8N3K9	4069 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095		A0A0B4J2A0	478 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	SEC14L6	B5MCN3	397 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	PPP5D1	E7EU14	171 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	OVOL1	O14753	267 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	HLA-A	P01891	365 aa	Known RBP	7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	NMS	Q5H8A3	153 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	C11orf87	Q6NUJ2	197 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	CLEC19A	Q6UXS0	136 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	OR2C3	Q8N628	320 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	EEF1AKMT3	Q96AZ1	226 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	MISP3	Q96FF7	219 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	CCDC140	Q96MF4	163 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	C20orf85	Q9H1P6	137 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	ZC4H2	Q9NQZ6	224 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	SHPK	Q9UHJ6	478 aa		7.89	□□□□□ -1.15
HDAC6-222	ENST00000478095	TRAV6	A0A075B6T7	132 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	C9orf170	A2RU37	121 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	BMPR1B	O00238	502 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	UPK1B	O75841	260 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	DUS4L	O95620	317 aa	Known RBP	7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	OR4E1	P0C645	316 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	SULT1A3	P0DMM9	295 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	SULT1A4	P0DMN0	295 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	ZP3	P21754	424 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	SYNJ2BP	P57105	145 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	IFITM3	Q01628	133 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	RPEL1	Q2QD12	228 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	KLK9	Q2XQG4	91 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	C4orf46	Q504U0	113 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	MCRIP2	Q9BUT9	160 aa	Known RBP	7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	ENY2	Q9NPA8	101 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	THYN1	Q9P016	225 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	KLK9	Q9UKQ9	250 aa		7.88	□□□□□ -1.15
HDAC6-222	ENST00000478095	CEBPZOS	A8MTT3	80 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	CYB5B	O43169	146 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	SAP30	O75446	220 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	IGHV3-48	P01763	117 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	TCRB	P04435	133 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	HOXB5	P09067	269 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	GPR183	P32249	361 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	ARL3	P36405	182 aa		7.87	□□□□□ -1.15
HDAC6-222	ENST00000478095	SPCS3	P61009	180 aa		7.87	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms