RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 ATG12O94817 140 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 CD74P04233 296 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 CD3DP04234 171 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 CD7P09564 240 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 LYL1P12980 280 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 MFAP2P55001 183 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 MRPS10P82664 201 aaKnown RBP9.07□□□□□ -0.96
SYNE1-223ENST00000476519 SSBP1Q04837 148 aaKnown RBP9.07□□□□□ -0.96
SYNE1-223ENST00000476519 CASC10Q5T4H9 136 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 TMEM229BQ8NBD8 167 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 ZFAND1Q8TCF1 268 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 WDR89Q96FK6 387 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-223ENST00000476519 C5orf66Q9H5L9 145 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 RABL2AQ9UBK7 228 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-223ENST00000476519 MLXQ9UH92 298 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 RABL2BQ9UNT1 228 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 CEPT1Q9Y6K0 416 aa9.07□□□□□ -0.96
SYNE1-223ENST00000476519 GABARAPH6UMI1 98 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 K7EIM0 57 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 K7EMT4 169 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 B3GALNT1O75752 331 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 IGKV1-39P01597 117 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 IGKV1D-39P04432 117 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 PGAM2P15259 253 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 EDN2P20800 178 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 FCGR2BP31994 310 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-223ENST00000476519 PIGPP57054 158 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 TAS2R19P59542 299 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 ERHP84090 104 aaKnown RBP9.06□□□□□ -0.96
SYNE1-223ENST00000476519 PRCDQ00LT1 54 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 RBPMS2Q6ZRY4 209 aaKnown RBP9.06□□□□□ -0.96
SYNE1-223ENST00000476519 TMEM61Q8N0U2 210 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 OR2C3Q8N628 320 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 DEFB125Q8N687 156 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 ZNF114Q8NC26 417 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 CACNG8Q8WXS5 425 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 TMEM190Q8WZ59 177 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 TXN2Q99757 166 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 BCL7BQ9BQE9 202 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 EDA2RQ9HAV5 297 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 PLEKHA3Q9HB20 300 aa9.06□□□□□ -0.96
SYNE1-223ENST00000476519 OR2T8A6NH00 312 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 NDUFA4O00483 81 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 CTDSP2O14595 271 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 RGS5O15539 181 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 RAB3DO95716 219 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 TMBIM6P55061 237 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 MEF2DQ14814 521 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 CCDC71LQ8N9Z2 235 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 OR52B4Q8NGK2 314 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 RAB2BQ8WUD1 216 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 MRGPRFQ96AM1 343 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 ISOC1Q96CN7 298 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 MIXL1Q9H2W2 232 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 DAZ1Q9NQZ3 744 aaKnown RBP9.05□□□□□ -0.96
SYNE1-223ENST00000476519 COPZ2Q9P299 210 aa9.05□□□□□ -0.96
SYNE1-223ENST00000476519 SACSQ9NZJ4 4579 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 A0A0B4J293 547 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 IGHV3-35A0A0C4DH35 117 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 C3orf85A0A1B0GTC6 90 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 RBMY1BA6NDE4 496 aaKnown RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 RBMY1EA6NEQ0 496 aaKnown RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 C15orf62A8K5M9 175 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 F8W735 103 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 INS-IGF2F8WCM5 200 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 I3L2K1 104 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 NUPL2O15504 423 aaKnown RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 CTSGP08311 255 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 RBMY1DP0C7P1 496 aaKnown RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 PI3P19957 117 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 ADMP35318 185 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 MFAP4P55083 255 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 RELQ04864 619 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 SPCS2Q15005 226 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 Q56UQ5 140 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 RNASE12Q5GAN4 147 aaKnown RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 LAMTOR1Q6IAA8 161 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 STEAP1BQ6NZ63 245 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 BTNL8Q6UX41 500 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 CLVS1Q8IUQ0 354 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 SPAG8Q99932 426 aaPredicted RBP9.04□□□□□ -0.96
SYNE1-223ENST00000476519 CHRDL1Q9BU40 450 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 HIPK2Q9H2X6 1198 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 SRD5A3Q9H8P0 318 aa9.04□□□□□ -0.96
SYNE1-223ENST00000476519 IGHV3-21A0A0B4J1V1 117 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 TSPAN4O14817 238 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 CTDSPLO15194 276 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 SCAF4O95104 1147 aaKnown RBP9.03□□□□□ -0.96
SYNE1-223ENST00000476519 CTSDP07339 412 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-223ENST00000476519 P0C879 139 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 SURF2Q15527 256 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-223ENST00000476519 SCGB2B2Q4G0G5 96 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 UBAC2Q8NBM4 344 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 OR4D10Q8NGI6 311 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 RRNAD1Q96FB5 475 aaKnown RBP9.03□□□□□ -0.96
SYNE1-223ENST00000476519 TP53RKQ96S44 253 aa9.03□□□□□ -0.96
SYNE1-223ENST00000476519 DISC1C4P0D8 188 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 MT-CO2P00403 227 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 IGKV1-5P01602 117 aa9.02□□□□□ -0.97
SYNE1-223ENST00000476519 UCP1P25874 307 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms