RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 OR13C7P0DN81 318 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 PTBP1P26599 531 aaKnown RBP eCLIP10.59□□□□□ -0.71
UPF3A-204ENST00000475218 RCVRNP35243 200 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 LAX1Q8IWV1 398 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 OR1L8Q8NGR8 309 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 CCDC32Q9BV29 185 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 TMEM14BQ9NUH8 114 aa10.59□□□□□ -0.71
UPF3A-204ENST00000475218 ZNF320A2RRD8 509 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 C8orf88P0DMB2 117 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 RORCP51449 518 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 TBC1D26Q86UD7 250 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 CMTM1Q8IZ96 169 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 UXS1Q8NBZ7 420 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 SEC22AQ96IW7 307 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 ZNF436Q9C0F3 470 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-204ENST00000475218 TECRQ9NZ01 308 aaKnown RBP10.58□□□□□ -0.72
UPF3A-204ENST00000475218 KLK11Q9UBX7 282 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 OR51B2Q9Y5P1 312 aa10.58□□□□□ -0.72
UPF3A-204ENST00000475218 K7EIM0 57 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 UCP3P55916 312 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 ERVK-16P61578 105 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 RNASE12Q5GAN4 147 aaKnown RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 LHFPL1Q86WI0 220 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 VN1R17PQ8TDU5 208 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 ABHD1Q96SE0 405 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 SPATA25Q9BR10 227 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 MIXL1Q9H2W2 232 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 HIPK2Q9H2X6 1198 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 TUBA4BQ9H853 241 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 GAR1Q9NY12 217 aaKnown RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 F11RQ9Y624 299 aaKnown RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 IGHV3-21A0A0B4J1V1 117 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 RGS13O14921 159 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 TSPAN5P62079 268 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 GUCA2BQ16661 112 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 FAM106AQ4KMX7 169 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 THOC7Q6I9Y2 204 aaKnown RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 BTNL8Q6UX41 500 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 OR52I2Q8NH67 350 aa10.57□□□□□ -0.72
UPF3A-204ENST00000475218 LSM10Q969L4 123 aaKnown RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 FAM212BQ9NTI7 297 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-204ENST00000475218 C15orf61A6NNL5 157 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 TGOLN2O43493 480 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 ADMP35318 185 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 SPANXN2Q5MJ10 180 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 SLC25A24Q6NUK1 477 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 OR4D10Q8NGI6 311 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 SCARB1Q8WTV0 552 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 CHRDL1Q9BU40 450 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 HINT2Q9BX68 163 aa10.56□□□□□ -0.72
UPF3A-204ENST00000475218 OR2T8A6NH00 312 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 OR11H12B2RN74 326 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 TPPPO94811 219 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 CD3DP04234 171 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 P0C879 139 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 LYL1P12980 280 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 PI3P19957 117 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 IZUMO4Q1ZYL8 232 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 ZNF57Q68EA5 555 aaPredicted RBP10.55□□□□□ -0.72
UPF3A-204ENST00000475218 PLET1Q6UQ28 207 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 HSD17B13Q7Z5P4 300 aaPredicted RBP10.55□□□□□ -0.72
UPF3A-204ENST00000475218 SLC38A6Q8IZM9 456 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 TMEM190Q8WZ59 177 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 MRGPRFQ96AM1 343 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 FAM110AQ9BQ89 295 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 SRD5A3Q9H8P0 318 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 SLC2A8Q9NY64 477 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 PRNDQ9UKY0 176 aa10.55□□□□□ -0.72
UPF3A-204ENST00000475218 SCAF4O95104 1147 aaKnown RBP10.54□□□□□ -0.72
UPF3A-204ENST00000475218 ZFAND6Q6FIF0 208 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 LPCAT3Q6P1A2 487 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 OR5B3Q8NH48 314 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 THYN1Q9P016 225 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 EXTL2Q9UBQ6 330 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 MTFP1Q9UDX5 166 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 FAM25AB3EWG3 89 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 FAM25CB3EWG5 89 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 FAM25GB3EWG6 89 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 SNAPC5O75971 98 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 IGKV1-5P01602 117 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 RND3P61587 244 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 TP53RKQ96S44 253 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 C21orf62Q9NYP8 219 aa10.54□□□□□ -0.72
UPF3A-204ENST00000475218 IGHV3OR16-8A0A075B7F1 116 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 I3L2K1 104 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 ELLP55199 621 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-204ENST00000475218 MZT2AQ6P582 158 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 CCDC190Q86UF4 302 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 OR2C3Q8N628 320 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 MARC2Q969Z3 335 aa10.53□□□□□ -0.72
UPF3A-204ENST00000475218 BSCL2Q96G97 398 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-204ENST00000475218 C6orf62Q9GZU0 229 aaPredicted RBP10.53□□□□□ -0.72
UPF3A-204ENST00000475218 MRPL27Q9P0M9 148 aaKnown RBP10.53□□□□□ -0.72
UPF3A-204ENST00000475218 HYDINQ4G0P3 5121 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 CTDSP2O14595 271 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 CD74P04233 296 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 CTSGP08311 255 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 RNASE10Q5GAN6 216 aaKnown RBP10.52□□□□□ -0.72
UPF3A-204ENST00000475218 OR1P1Q8NH06 330 aa10.52□□□□□ -0.72
UPF3A-204ENST00000475218 AP3S1Q92572 193 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms