RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 RNASE12Q5GAN4 147 aaKnown RBP13.88□□□□□ -0.19
COL7A1-209ENST00000474432 GPR107Q5VW38 600 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 SLC38A6Q8IZM9 456 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 OR52I2Q8NH67 350 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 MARC2Q969Z3 335 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 ATP6V0BQ99437 205 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 FAM110AQ9BQ89 295 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 MIXL1Q9H2W2 232 aa13.88□□□□□ -0.19
COL7A1-209ENST00000474432 BSCL2Q96G97 398 aaPredicted RBP13.87□□□□□ -0.19
COL7A1-209ENST00000474432 LYSTQ99698 3801 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 PALMDQ9NP74 551 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 FKBP11Q9NYL4 201 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 C21orf62Q9NYP8 219 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 EXTL2Q9UBQ6 330 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 MTFP1Q9UDX5 166 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 UFC1Q9Y3C8 167 aa13.87□□□□□ -0.19
COL7A1-209ENST00000474432 DNAH1Q9P2D7 4330 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 TRAV25A0A0B4J276 109 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 FAM25AB3EWG3 89 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 FAM25CB3EWG5 89 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 FAM25GB3EWG6 89 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 CD3DP04234 171 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 CTSGP08311 255 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 P0C879 139 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 PI3P19957 117 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 ALDH3B2P48448 385 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 RND3P61587 244 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 IZUMO4Q1ZYL8 232 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 MZT2AQ6P582 158 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 OR2C3Q8N628 320 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 OR4D10Q8NGI6 311 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 OR1P1Q8NH06 330 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 MRGPRFQ96AM1 343 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 TMEM56Q96MV1 263 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 TSC22D3Q99576 134 aa13.86□□□□□ -0.19
COL7A1-209ENST00000474432 I3L2K1 104 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 CYB5BO43169 146 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 IGKV1-5P01602 117 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 IFNA6P05013 189 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 SPSB3Q6PJ21 355 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 SLC16A13Q7RTY0 426 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 OR52B4Q8NGK2 314 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 C5orf66Q9H5L9 145 aa13.85□□□□□ -0.19
COL7A1-209ENST00000474432 LCE6AA0A183 80 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 NDUFA4O00483 81 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 CD74P04233 296 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 S100GP29377 79 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 PRCDQ00LT1 54 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 H2BFWTQ7Z2G1 175 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 ARRDC1Q8N5I2 433 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 ZNF114Q8NC26 417 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 OR1L6Q8NGR2 347 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 AP3S1Q92572 193 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 TP53RKQ96S44 253 aa13.84□□□□□ -0.19
COL7A1-209ENST00000474432 IGHV3OR16-8A0A075B7F1 116 aa13.83□□□□□ -0.2
COL7A1-209ENST00000474432 HSPE1P61604 102 aaKnown RBP13.83□□□□□ -0.2
COL7A1-209ENST00000474432 SPCS2Q15005 226 aa13.83□□□□□ -0.2
COL7A1-209ENST00000474432 RNASE10Q5GAN6 216 aaKnown RBP13.83□□□□□ -0.2
COL7A1-209ENST00000474432 OR4A16Q8NH70 328 aa13.83□□□□□ -0.2
COL7A1-209ENST00000474432 ZNF486Q96H40 463 aaPredicted RBP13.83□□□□□ -0.2
COL7A1-209ENST00000474432 DAZ1Q9NQZ3 744 aaKnown RBP13.83□□□□□ -0.2
COL7A1-209ENST00000474432 A0A0B4J293 547 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 K7EMT4 169 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 CTDSP2O14595 271 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 TSPAN4O14817 238 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 TBPP20226 339 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 FCGR2BP31994 310 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-209ENST00000474432 PIGPP57054 158 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 TMEM229BQ8NBD8 167 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 UBAC2Q8NBM4 344 aa13.82□□□□□ -0.2
COL7A1-209ENST00000474432 ZNF207O43670 478 aaKnown RBP13.81□□□□□ -0.2
COL7A1-209ENST00000474432 IGHV3-48P01763 117 aa13.81□□□□□ -0.2
COL7A1-209ENST00000474432 PGAM2P15259 253 aa13.81□□□□□ -0.2
COL7A1-209ENST00000474432 ANKRD55Q3KP44 614 aa13.81□□□□□ -0.2
COL7A1-209ENST00000474432 Q56UQ5 140 aa13.81□□□□□ -0.2
COL7A1-209ENST00000474432 RBPMS2Q6ZRY4 209 aaKnown RBP13.81□□□□□ -0.2
COL7A1-209ENST00000474432 SPAG8Q99932 426 aaPredicted RBP13.81□□□□□ -0.2
COL7A1-209ENST00000474432 MRPS26Q9BYN8 205 aaKnown RBP13.81□□□□□ -0.2
COL7A1-209ENST00000474432 A0A0G2JRQ6 117 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 MT-CO2P00403 227 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 PPP5CP53041 499 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 ODF3L2Q3SX64 289 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 SP6Q3SY56 376 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 SPINK9Q5DT21 86 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 PVRIGQ6DKI7 326 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 OR13C8Q8NGS7 320 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 TERB2Q8NHR7 220 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 MISP3Q96FF7 219 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 OVOL2Q9BRP0 275 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 C20orf24Q9BUV8 137 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 GGTLC1Q9BX51 225 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 SMPXQ9UHP9 88 aa13.8□□□□□ -0.2
COL7A1-209ENST00000474432 LOC102724200A0A096LPH7 203 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-209ENST00000474432 C3orf85A0A1B0GTC6 90 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 C15orf62A8K5M9 175 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 INS-IGF2F8WCM5 200 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 GABARAPH6UMI1 98 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 MFAP4P55083 255 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 OR10C1Q96KK4 312 aa13.79□□□□□ -0.2
COL7A1-209ENST00000474432 TXN2Q99757 166 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms