RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 IBA57Q5T440 356 aaKnown RBP0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 DCXRQ7Z4W1 244 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 DHFR2Q86XF0 187 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 OR8B3Q8NGG8 313 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BHQ93079 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 CCDC42Q96M95 316 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 PPP1R2P1Q96PQ5 205 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 OR52E6Q96RD3 313 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BNQ99877 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 HIST1H2BMQ99879 126 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 DERL1Q9BUN8 251 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 BAIAP2Q9UQB8 552 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 MTUS2Q5JR59 1369 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 PLB1Q6P1J6 1458 aa0.9□□□□□ -2.27
CCDC88A-212ENST00000474059 KIF13BQ9NQT8 1826 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 CLDN24A6NM45 220 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 F8W036 122 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 RPS17P08708 135 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 RPSAP08865 295 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 RPL5P46777 297 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 FXYD2P54710 66 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 MYL6P60660 151 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 PSME3P61289 254 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 HBA1P69905 142 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 KCNJ8Q15842 424 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 NDUFA5Q16718 116 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 ACOT6Q3I5F7 207 aaPredicted RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 C20orf196Q8IYI0 205 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 LRRC25Q8N386 305 aaPredicted RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 CLDN22Q8N7P3 220 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF439Q8NDP4 499 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 PRTFDC1Q9NRG1 225 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 FBXL12Q9NXK8 326 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 VPS29Q9UBQ0 182 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 LHFPL6Q9Y693 200 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 CCDC88CQ9P219 2028 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 FN1P02751 2386 aaKnown RBP0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 SETD5Q9C0A6 1442 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 MYO3BQ8WXR4 1341 aa0.89□□□□□ -2.27
CCDC88A-212ENST00000474059 DOCK5Q9H7D0 1870 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 LAMB2P55268 1798 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 TONSLQ96HA7 1378 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 FAAHO00519 579 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 SDCBPO00560 298 aaPredicted RBP0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 PMP2P02689 132 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 SERPINA6P08185 405 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 CEBPGP53567 150 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 DEFA1P59665 94 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 RPS20P60866 119 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 ZNF345Q14585 488 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 LPCAT3Q6P1A2 487 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 RPL22L1Q6P5R6 122 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 TRAPPC5Q8IUR0 188 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 ANKRD29Q8N6D5 301 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 MNS1Q8NEH6 495 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 OR13C4Q8NGS5 318 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 MCFD2Q8NI22 146 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 RASSF5Q8WWW0 418 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 C11orf40Q8WZ69 217 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 C8orf76Q96K31 380 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 TSPAN32Q96QS1 320 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 CYSTM1Q9H1C7 97 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 C11orf68Q9H3H3 251 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 MRPL27Q9P0M9 148 aaKnown RBP0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 TOPBP1Q92547 1522 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 KIAA2026Q5HYC2 2103 aa0.88□□□□□ -2.27
CCDC88A-212ENST00000474059 NUP155O75694 1391 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 ZFHX2Q9C0A1 2572 aaPredicted RBP0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 PQLC2LA1A4F0 135 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 KPNA3O00505 521 aaPredicted RBP0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 METTL15P1P0C7V9 234 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 LYNX1P0DP58 116 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 OMPP47874 163 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 LSM6P62312 80 aaKnown RBP0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 AESQ08117 197 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 SPANXN3Q5MJ09 141 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 SPOPLQ6IQ16 392 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 PFN4Q8NHR9 129 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 DCUN1D1Q96GG9 259 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 SCGB3A1Q96QR1 104 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 NIPSNAP1Q9BPW8 284 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 ADAT1Q9BUB4 502 aaKnown RBP0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 COMMD5Q9GZQ3 224 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 TMEM56-RWDD3S4R434 201 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 TTC21AQ8NDW8 1320 aa0.87□□□□□ -2.27
CCDC88A-212ENST00000474059 HEATR5AQ86XA9 2040 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TRAV26-2A0A0B4J265 109 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 FAM236DA0A1B0GTK5 79 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 EXOC1LA0A1B0GW35 172 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 DPRXA6NFQ7 191 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 OR4C46A6NHA9 309 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 MRPS14O60783 128 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 RPP14O95059 124 aaKnown RBP0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 SHBGP04278 402 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 TCRBP04435 133 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 UBBP0CG47 229 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 FAM236CP0DP71 79 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 CDKN2CP42773 168 aa0.86□□□□□ -2.27
CCDC88A-212ENST00000474059 RANP62826 216 aaKnown RBP0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 217.2 ms