RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 P2RX4Q99571 388 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 PLEKHA3Q9HB20 300 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 NUDT15Q9NV35 164 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 KLK9Q9UKQ9 250 aa9.26□□□□□ -0.93
VPS13D-204ENST00000469054 IGLV11-55A0A075B6I3 123 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 FAM223BA6NKX1 122 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 INS-IGF2F8WCM5 200 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 OR2J3O76001 311 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 H2AFB2P0C5Z0 115 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 SULT1A3P0DMM9 295 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 SULT1A4P0DMN0 295 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 HIST1H1BP16401 226 aaKnown RBP9.25□□□□□ -0.93
VPS13D-204ENST00000469054 SPCS3P61009 180 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 ERHP84090 104 aaKnown RBP9.25□□□□□ -0.93
VPS13D-204ENST00000469054 DEFA5Q01523 94 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 ATP5G2Q06055 141 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 SPINK9Q5DT21 86 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 FAM223AQ8IWN6 122 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 OR2C3Q8N628 320 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 DUSP18Q8NEJ0 188 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 OR11H1Q8NG94 326 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 OR1N2Q8NGR9 330 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 COQ8AQ8NI60 647 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 DUX3Q96PT4 197 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 CACFD1Q9UGQ2 172 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 TMED3Q9Y3Q3 217 aa9.25□□□□□ -0.93
VPS13D-204ENST00000469054 A0A1B0GU03 582 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 CYB5BO43169 146 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 SMCO1Q147U7 214 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 C15orf32Q32M92 178 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 LINC01559Q495D7 138 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 SLC25A24Q6NUK1 477 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 NRARPQ7Z6K4 114 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 WFDC9Q8NEX5 89 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 DPF1Q92782 380 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 THYN1Q9P016 225 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 FBXL7Q9UJT9 491 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 DMRT1Q9Y5R6 373 aa9.24□□□□□ -0.93
VPS13D-204ENST00000469054 F11RQ9Y624 299 aaKnown RBP9.24□□□□□ -0.93
VPS13D-204ENST00000469054 NDUFB8O95169 186 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 HSPB1P04792 205 aaKnown RBP9.23□□□□□ -0.93
VPS13D-204ENST00000469054 HOXB5P09067 269 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 SLC25A6P12236 298 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 HOXA1P49639 335 aaPredicted RBP9.23□□□□□ -0.93
VPS13D-204ENST00000469054 ZNF616Q08AN1 781 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 FHL3Q13643 280 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 PDLIM3Q53GG5 364 aaPredicted RBP9.23□□□□□ -0.93
VPS13D-204ENST00000469054 GGNBP1Q5YKI7 109 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 ZNF343Q6P1L6 599 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 LINC00482Q8N8I6 264 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 ZNF114Q8NC26 417 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 OR52B4Q8NGK2 314 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 OR1L6Q8NGR2 347 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 OR1P1Q8NH06 330 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 MITD1Q8WV92 249 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 RANGRFQ9HD47 186 aaPredicted RBP9.23□□□□□ -0.93
VPS13D-204ENST00000469054 ENY2Q9NPA8 101 aa9.23□□□□□ -0.93
VPS13D-204ENST00000469054 WNK1Q9H4A3 2382 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 IGHV4OR15-8A0A075B7B6 117 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 A0A087WW49 117 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 CEBPZOSA8MTT3 80 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 LINC01619G3V211 115 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PITX3O75364 302 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 ADAP1O75689 374 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 OR8U8P0C7N1 319 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 CD33P20138 364 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 MFAP2P55001 183 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PRR20EP86478 221 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PRR20CP86479 221 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PRR20DP86480 221 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PRR20BP86481 221 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PRR20AP86496 221 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 TNFRSF9Q07011 255 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 EXOSC2Q13868 293 aaKnown RBP9.22□□□□□ -0.93
VPS13D-204ENST00000469054 FAM209BQ5JX69 171 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PLET1Q6UQ28 207 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 OR1S1Q8NH92 325 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 ZNF431Q8TF32 576 aaPredicted RBP9.22□□□□□ -0.93
VPS13D-204ENST00000469054 SEC22CQ9BRL7 303 aa9.22□□□□□ -0.93
VPS13D-204ENST00000469054 PEF1Q9UBV8 284 aaKnown RBP9.22□□□□□ -0.93
VPS13D-204ENST00000469054 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.21□□□□□ -0.94
VPS13D-204ENST00000469054 ANKRD34BA5PLL1 514 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 NXPH3O95157 252 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 IFNA21P01568 189 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 IL5P05113 134 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 SNCAP37840 140 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 EEF1AKMT3Q96AZ1 226 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 CXorf58Q96LI9 332 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 HSPB7Q9UBY9 170 aa9.21□□□□□ -0.94
VPS13D-204ENST00000469054 TRBV7-1A0A0A6YYK4 115 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 MFSD2BA6NFX1 497 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 MPTX1A8MV57 137 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 INMT-MINDY4F8WBC2 141 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 LCE2BO14633 110 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 TRBV12-3P01733 135 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 IGHV3-23P01764 117 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 RNASE2P10153 161 aaKnown RBP9.2□□□□□ -0.94
VPS13D-204ENST00000469054 ZP3P21754 424 aa9.2□□□□□ -0.94
VPS13D-204ENST00000469054 SUB1P53999 127 aaKnown RBP eCLIP9.2□□□□□ -0.94
VPS13D-204ENST00000469054 C12orf45Q8N5I9 185 aaPredicted RBP9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms