RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 USMG5Q96IX5 58 aa13.69□□□□□ -0.22
COL7A1-205ENST00000465238 A0A0B4J2A0 478 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 A0A0G2JRQ6 117 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 FAM240BA0A1B0GVZ2 78 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 IFNA17P01571 189 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 TCRBP04435 133 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 CTRB1P17538 263 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 RUNX1Q01196 453 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 CTRB2Q6GPI1 263 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 GPR146Q96CH1 333 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 WWC2-AS2Q96NR7 200 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.68□□□□□ -0.22
COL7A1-205ENST00000465238 SHPKQ9UHJ6 478 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 TBC1D24Q9ULP9 559 aa13.68□□□□□ -0.22
COL7A1-205ENST00000465238 FAM223BA6NKX1 122 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 I3L521 148 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 CYB5BO43169 146 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 ST8SIA3O43173 380 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 LGALS1P09382 135 aaKnown RBP13.67□□□□□ -0.22
COL7A1-205ENST00000465238 OR4E1P0C645 316 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 HIST1H1BP16401 226 aaKnown RBP13.67□□□□□ -0.22
COL7A1-205ENST00000465238 ANXA7P20073 488 aaKnown RBP13.67□□□□□ -0.22
COL7A1-205ENST00000465238 RHOGP84095 191 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 PRCDQ00LT1 54 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 ATP5G2Q06055 141 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 WT1-ASQ06250 92 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 ANKRD55Q3KP44 614 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 C4orf46Q504U0 113 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 LYZL2Q7Z4W2 148 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 FAM223AQ8IWN6 122 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 NECAP1Q8NC96 275 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 OR11H1Q8NG94 326 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 C20orf85Q9H1P6 137 aa13.67□□□□□ -0.22
COL7A1-205ENST00000465238 TRBV9A0A0B4J1U6 114 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 DUXBA0A1W2PPF3 345 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 C9orf170A2RU37 121 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 OR2J3O76001 311 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 HLA-AP01891 365 aaKnown RBP13.66□□□□□ -0.22
COL7A1-205ENST00000465238 NHLRC4P0CG21 123 aaPredicted RBP13.66□□□□□ -0.22
COL7A1-205ENST00000465238 DEFA1P59665 94 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 DEFA3P59666 94 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 DEFA5Q01523 94 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 IFITM3Q01628 133 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 FHL3Q13643 280 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 Q6ZRM9 215 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 C19orf35Q6ZS72 473 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 LRTM2Q8N967 370 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 OR1N2Q8NGR9 330 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 PLEKHA3Q9HB20 300 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 CACNG5Q9UF02 275 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 FBXL7Q9UJT9 491 aa13.66□□□□□ -0.22
COL7A1-205ENST00000465238 TRAV6A0A075B6T7 132 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 SEC14L6B5MCN3 397 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 SULT1A3P0DMM9 295 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 SULT1A4P0DMN0 295 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 ERHP84090 104 aaKnown RBP13.65□□□□□ -0.22
COL7A1-205ENST00000465238 LYG2Q86SG7 212 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 ENKURQ8TC29 256 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 FANCD2OSQ96PS1 177 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 ALX4Q9H161 411 aaPredicted RBP13.65□□□□□ -0.22
COL7A1-205ENST00000465238 ENY2Q9NPA8 101 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 NUDT15Q9NV35 164 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 THYN1Q9P016 225 aa13.65□□□□□ -0.22
COL7A1-205ENST00000465238 LSM4Q9Y4Z0 139 aaKnown RBP13.65□□□□□ -0.22
COL7A1-205ENST00000465238 HSPB1P04792 205 aaKnown RBP13.64□□□□□ -0.23
COL7A1-205ENST00000465238 H2AFB2P0C5Z0 115 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 ZNF616Q08AN1 781 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 DHRS2Q13268 280 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 SPINK9Q5DT21 86 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 NMSQ5H8A3 153 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 SLC25A24Q6NUK1 477 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 OR1L6Q8NGR2 347 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 COQ8AQ8NI60 647 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 CACFD1Q9UGQ2 172 aa13.64□□□□□ -0.23
COL7A1-205ENST00000465238 STAB2Q8WWQ8 2551 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 IGLV11-55A0A075B6I3 123 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 ANKRD34BA5PLL1 514 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 LINC01619G3V211 115 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 NDUFB8O95169 186 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 OR8U8P0C7N1 319 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 HOXA1P49639 335 aaPredicted RBP13.63□□□□□ -0.23
COL7A1-205ENST00000465238 SPCS3P61009 180 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 EXOSC2Q13868 293 aaKnown RBP13.63□□□□□ -0.23
COL7A1-205ENST00000465238 SMCO1Q147U7 214 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 KLK9Q2XQG4 91 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 C15orf32Q32M92 178 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 ZNF343Q6P1L6 599 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 OR2C3Q8N628 320 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 OR52E5Q8NH55 327 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 PRR25Q96S07 402 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 KLK9Q9UKQ9 250 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 TMED3Q9Y3Q3 217 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 F11RQ9Y624 299 aaKnown RBP13.63□□□□□ -0.23
COL7A1-205ENST00000465238 SORL1Q92673 2214 aa13.63□□□□□ -0.23
COL7A1-205ENST00000465238 A0A1B0GU03 582 aa13.62□□□□□ -0.23
COL7A1-205ENST00000465238 HOXB5P09067 269 aa13.62□□□□□ -0.23
COL7A1-205ENST00000465238 SNCAP37840 140 aa13.62□□□□□ -0.23
COL7A1-205ENST00000465238 INSL3P51460 131 aa13.62□□□□□ -0.23
COL7A1-205ENST00000465238 AARDQ4LEZ3 155 aa13.62□□□□□ -0.23
COL7A1-205ENST00000465238 OR1S1Q8NH92 325 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms