RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	PKD1L2	Q7Z442	2459 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	PDE6D	O43924	150 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGLV2-8	P01709	118 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR10J4	P0C629	311 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	ATP5G3	P48201	142 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	SELENOT	P62341	195 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	LCN2	P80188	198 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	VKORC1L1	Q8N0U8	176 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	CISD2	Q8N5K1	135 aa	Known RBP	7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	AHCTF1	Q8WYP5	2266 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	LRBA	P50851	2863 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	CEBPZOS	A8MTT3	80 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	GYPA	P02724	150 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	EFNB3	Q15768	340 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	FAM71F2	Q6NXP2	309 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	LINC00311	Q8N616	119 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	RFESD	Q8TAC1	157 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	ITLN1	Q8WWA0	313 aa		7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	YLPM1	P49750	1951 aa	Known RBP	7.12	□□□□□ -1.27
SYNE1-215	ENST00000460912	AMBP	P02760	352 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	CRYGB	P07316	175 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	PRCD	Q00LT1	54 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	MOGAT3	Q86VF5	341 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR5AN1	Q8NGI8	311 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	NEIL1	Q96FI4	390 aa	Predicted RBP	7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGF2BP2-AS1	Q96M15	143 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM204	Q9BSN7	226 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	SLC39A9	Q9NUM3	307 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	BET1L	Q9NYM9	111 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	PXMP4	Q9Y6I8	212 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	TRAV38-1	A0A0B4J264	116 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912		C9JCJ5	164 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	PAGE4	O60829	102 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	MYCNOS	P40205	109 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	GPR12	P47775	334 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	RAB7A	P51149	207 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	VAMP3	Q15836	100 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	C2orf83	Q53S99	150 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	SPINK9	Q5DT21	86 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	C22orf15	Q8WYQ4	148 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	FAM167A-AS1	Q96KT0	104 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	C7orf69	Q9H7B7	122 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	NDUFA4L2	Q9NRX3	87 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	ELOVL5	Q9NYP7	299 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	SLC25A10	Q9UBX3	287 aa	Predicted RBP	7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGKV1D-37	A0A075B6S9	117 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	UPK2	O00526	184 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	FCGR3B	O75015	233 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGKV1-16	P04430	117 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	RIPPLY3	P57055	190 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	KLF3	P57682	345 aa	Predicted RBP	7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	SMIM7	Q9BQ49	75 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	SEPSECS	Q9HD40	501 aa	Known RBP	7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	PITPNC1	Q9UKF7	332 aa		7.11	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZNF469	Q96JG9	3925 aa	Predicted RBP	7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	ATRX	P46100	2492 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	C20orf202	A1L168	122 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912		E7EUB6	86 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	IFNA1	P01562	189 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	GZMB	P10144	247 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	CD40	P25942	277 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	THBS3	P49746	956 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	PRRX1	P54821	245 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	ADIPOQ	Q15848	244 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	FAM201A	Q5SY85	155 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	SPATA31B1P	Q5VZV4	182 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	CST9LP1	Q5W188	147 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR4C5	Q8NGB2	326 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	UTP20	O75691	2785 aa	Known RBP	7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	TRGV10	A0A0A0MS01	117 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912		F6UZH7	168 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	MYOD1	P15172	320 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	GCH1	P30793	250 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	FAM3B	P58499	235 aa	Predicted RBP	7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	JOSD1	Q15040	202 aa	Predicted RBP	7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	ACOT6	Q3I5F7	207 aa	Predicted RBP	7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	TMEM177	Q53S58	311 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	ABHD12	Q8N2K0	398 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR1L8	Q8NGR8	309 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	ACY3	Q96HD9	319 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	CSMD2	Q7Z408	3487 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	IGF2R	P11717	2491 aa		7.1	□□□□□ -1.27
SYNE1-215	ENST00000460912	C11orf94	C9JXX5	98 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	FOXH1	O75593	365 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR5G3	P0C626	314 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	ARL14EPL	P0DKL9	152 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	RNASE2	P10153	161 aa	Known RBP	7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	ATP5I	P56385	69 aa	Predicted RBP	7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	HSPE1	P61604	102 aa	Known RBP	7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	OR4S2	Q8NH73	311 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	PSMG3-AS1	Q96PY0	264 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	LINC00312	Q9Y6C7	94 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	TEX50	A0A1B0GTY4	177 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	C17orf112	F2Z3M2	114 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	DVL1	O14640	695 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	IL3RA	P26951	378 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	ZNF83	P51522	516 aa		7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	SSBP2	P81877	361 aa	Predicted RBP	7.09	□□□□□ -1.27
SYNE1-215	ENST00000460912	SAPCD1	Q5SSQ6	148 aa		7.09	□□□□□ -1.27

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