RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 DPF1Q92782 380 aa21.59■■□□□ 1.05
SMARCC1-203ENST00000454240 CTNNBIP1Q9NSA3 81 aaPredicted RBP21.59■■□□□ 1.05
SMARCC1-203ENST00000454240 LINC01619G3V211 115 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 NDUFB8O95169 186 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 TCRBP04435 133 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 OR8U8P0C7N1 319 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 MECP2P51608 486 aaKnown RBP21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 C15orf32Q32M92 178 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 OR2C3Q8N628 320 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 CACNG5Q9UF02 275 aa21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 F11RQ9Y624 299 aaKnown RBP21.58■■□□□ 1.05
SMARCC1-203ENST00000454240 DUXBA0A1W2PPF3 345 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 C9orf170A2RU37 121 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 IFNA17P01571 189 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 OR4E1P0C645 316 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 ANXA7P20073 488 aaKnown RBP21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 OR52E5Q8NH55 327 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 PDCD10Q9BUL8 212 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 C20orf85Q9H1P6 137 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 PLEKHA3Q9HB20 300 aa21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 RANGRFQ9HD47 186 aaPredicted RBP21.57■■□□□ 1.04
SMARCC1-203ENST00000454240 INS-IGF2F8WCM5 200 aa21.56■■□□□ 1.04
SMARCC1-203ENST00000454240 RAB25P57735 213 aa21.56■■□□□ 1.04
SMARCC1-203ENST00000454240 MZT2BQ6NZ67 158 aa21.56■■□□□ 1.04
SMARCC1-203ENST00000454240 RCC1LQ96I51 464 aaKnown RBP21.56■■□□□ 1.04
SMARCC1-203ENST00000454240 PEF1Q9UBV8 284 aaKnown RBP21.56■■□□□ 1.04
SMARCC1-203ENST00000454240 ANKRD34BA5PLL1 514 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 CYB5BO43169 146 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 SULT1A3P0DMM9 295 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 SULT1A4P0DMN0 295 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 IGLL1P15814 213 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 MFAP2P55001 183 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 EXOSC2Q13868 293 aaKnown RBP21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 PDLIM3Q53GG5 364 aaPredicted RBP21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 SPINK9Q5DT21 86 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 SAMD5Q5TGI4 173 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 THYN1Q9P016 225 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 NOTCH3Q9UM47 2321 aa21.55■■□□□ 1.04
SMARCC1-203ENST00000454240 FAM240BA0A1B0GVZ2 78 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 G3V4G9 280 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 HLA-AP01891 365 aaKnown RBP21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 SPCS3P61009 180 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 ERHP84090 104 aaKnown RBP21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 DHRS2Q13268 280 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 OXLD1Q5BKU9 147 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 SLC25A24Q6NUK1 477 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 LYG2Q86SG7 212 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 ZNF114Q8NC26 417 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 OR1L6Q8NGR2 347 aa21.54■■□□□ 1.04
SMARCC1-203ENST00000454240 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 DUS4LO95620 317 aaKnown RBP21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 TRBV12-3P01733 135 aa21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 SLURP1P55000 103 aa21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 SMCO1Q147U7 214 aa21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 OR1P1Q8NH06 330 aa21.53■■□□□ 1.04
SMARCC1-203ENST00000454240 A0A1B0GU03 582 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 C4orf46Q504U0 113 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 FAM209BQ5JX69 171 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 DCUN1D4Q92564 292 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 DLX4Q92988 240 aaPredicted RBP21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 CXorf58Q96LI9 332 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 NUDT15Q9NV35 164 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 CACFD1Q9UGQ2 172 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 TMED3Q9Y3Q3 217 aa21.52■■□□□ 1.04
SMARCC1-203ENST00000454240 TRAV6A0A075B6T7 132 aa21.51■■□□□ 1.03
SMARCC1-203ENST00000454240 EEF1AKMT3Q96AZ1 226 aa21.51■■□□□ 1.03
SMARCC1-203ENST00000454240 MCRIP2Q9BUT9 160 aaKnown RBP21.51■■□□□ 1.03
SMARCC1-203ENST00000454240 MFSD2BA6NFX1 497 aa21.5■■□□□ 1.03
SMARCC1-203ENST00000454240 ZP3P21754 424 aa21.5■■□□□ 1.03
SMARCC1-203ENST00000454240 HOXD3P31249 432 aaPredicted RBP21.5■■□□□ 1.03
SMARCC1-203ENST00000454240 CCDC140Q96MF4 163 aa21.5■■□□□ 1.03
SMARCC1-203ENST00000454240 TRBV7-1A0A0A6YYK4 115 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 IGHV3-23P01764 117 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 H2AFB2P0C5Z0 115 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 SLC25A6P12236 298 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 HOXA1P49639 335 aaPredicted RBP21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 COQ8AQ8NI60 647 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 VN1R17PQ8TDU5 208 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 ENY2Q9NPA8 101 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 S4R3C0 116 aa21.49■■□□□ 1.03
SMARCC1-203ENST00000454240 BMPR1BO00238 502 aa21.48■■□□□ 1.03
SMARCC1-203ENST00000454240 PITX3O75364 302 aa21.48■■□□□ 1.03
SMARCC1-203ENST00000454240 HOXB5P09067 269 aa21.48■■□□□ 1.03
SMARCC1-203ENST00000454240 C1QL4Q86Z23 238 aa21.48■■□□□ 1.03
SMARCC1-203ENST00000454240 HSPB7Q9UBY9 170 aa21.48■■□□□ 1.03
SMARCC1-203ENST00000454240 OVOL1O14753 267 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 SNCAP37840 140 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 KLF5Q13887 457 aaPredicted RBP21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 BEAN1Q3B7T3 259 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 KPRPQ5T749 579 aaPredicted RBP21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 PVRIGQ6DKI7 326 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 DUSP18Q8NEJ0 188 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 OR52B4Q8NGK2 314 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 ZNF502Q8TBZ5 544 aa21.47■■□□□ 1.03
SMARCC1-203ENST00000454240 K7EIM0 57 aa21.46■■□□□ 1.03
SMARCC1-203ENST00000454240 NXPH3O95157 252 aa21.46■■□□□ 1.03
SMARCC1-203ENST00000454240 RNASE2P10153 161 aaKnown RBP21.46■■□□□ 1.03
SMARCC1-203ENST00000454240 TNFRSF9Q07011 255 aa21.46■■□□□ 1.03
SMARCC1-203ENST00000454240 BSXQ3C1V8 233 aa21.46■■□□□ 1.03
SMARCC1-203ENST00000454240 GGNBP1Q5YKI7 109 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms