RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 IGKV1D-13A0A0B4J2D9 117 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 PEX7O00628 323 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 IGKV1-13P0DP09 117 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 PLP1P60201 277 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 ZNF506Q5JVG8 444 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 C12orf54Q6X4T0 127 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 LINC00312Q9Y6C7 94 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 TET1Q8NFU7 2136 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 SEMA5BQ9P283 1151 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 RTTNQ86VV8 2226 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 CA7P43166 264 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 ST6GALNAC3Q8NDV1 305 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 MRAP2Q96G30 205 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 PRELID3AQ96N28 172 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 GPX4P36969 197 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-209ENST00000438120 OR4X2Q8NGF9 303 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 LINC01587Q99440 93 aa14.4□□□□□ -0.1
PTPRF-209ENST00000438120 A0A0G2JLM5 398 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-209ENST00000438120 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-209ENST00000438120 FGFBP3Q8TAT2 258 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 RAMP3O60896 148 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 GNG5P63218 68 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 FAM71F2Q6NXP2 309 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 RTN4RL2Q86UN3 420 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 ZIC4Q8N9L1 334 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 GVINP1Q7Z2Y8 2422 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 FLVCR1-AS1Q8TAF5 88 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 TMEM70Q9BUB7 260 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 CACNA1EQ15878 2313 aa14.39□□□□□ -0.11
PTPRF-209ENST00000438120 RBBP6Q7Z6E9 1792 aaKnown RBP14.39□□□□□ -0.11
PTPRF-209ENST00000438120 NRN1LQ496H8 165 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 NR2C2APQ86WQ0 139 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 APOHP02749 345 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 MEF2CQ06413 473 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 REC114Q7Z4M0 266 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 MTCL1Q9Y4B5 1905 aaKnown RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 SBF2Q86WG5 1849 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 TMEM136Q6ZRR5 245 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 Q9H3A6 140 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 PRR32B1ATL7 298 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 TBR1Q16650 682 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 RNASE6Q93091 150 aaKnown RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 CD55P08174 381 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 IGFBP3P17936 291 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 CDX1P47902 265 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 FOXF2Q12947 444 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 LHFPL4Q7Z7J7 247 aa14.38□□□□□ -0.11
PTPRF-209ENST00000438120 MRPL13Q9BYD1 178 aaKnown RBP14.38□□□□□ -0.11
PTPRF-209ENST00000438120 IGLV3-12A0A075B6K2 115 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 IGKV1-9A0A0C4DH69 117 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 ST6GALNAC6Q969X2 333 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 ZNF319Q9P2F9 582 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 LINC00527Q9UJ94 153 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 ZNF414Q96IQ9 312 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 DDTP30046 118 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 ATP5IP56385 69 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-209ENST00000438120 EFNB1P98172 346 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 WFDC12Q8WWY7 111 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 PLSCR2Q9NRY7 297 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 IGHV1-18A0A0C4DH31 117 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 TMEM250H0YL14 139 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 PLXNA1Q9UIW2 1896 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 K7ERU9 68 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 CFHR1Q03591 330 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 TOMM7Q9P0U1 55 aa14.37□□□□□ -0.11
PTPRF-209ENST00000438120 TRBV9A0A0B4J1U6 114 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 NBR2O15453 112 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 FOXG1P55316 489 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-209ENST00000438120 TMEM101Q96IK0 257 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 SPACA3Q8IXA5 215 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 KIR3DL3Q8N743 410 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 IL36BQ9NZH7 164 aa14.36□□□□□ -0.11
PTPRF-209ENST00000438120 TAF1LQ8IZX4 1826 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 IGKV3D-20A0A0C4DH25 116 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 ZNF525Q8N782 197 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 GGACTQ9BVM4 153 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 LOC102723996A0A087X1L8 192 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 TRBV6-7A0A0A0MS04 114 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 MRPS18CQ9Y3D5 142 aaKnown RBP14.35□□□□□ -0.11
PTPRF-209ENST00000438120 ANKRD36A6QL64 1941 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 TRGV2A0A075B6R0 118 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 MORN2Q502X0 79 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 C14orf144Q96I85 54 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 BRCA1P38398 1863 aaKnown RBP14.35□□□□□ -0.11
PTPRF-209ENST00000438120 OR11H12B2RN74 326 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 JOSD1Q15040 202 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-209ENST00000438120 OR11H1Q8NG94 326 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 OR11H2Q8NH07 326 aa14.35□□□□□ -0.11
PTPRF-209ENST00000438120 SRP19P09132 144 aaKnown RBP14.34□□□□□ -0.11
PTPRF-209ENST00000438120 SRD5A1P18405 259 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 ZFP36L1Q07352 338 aaKnown RBP14.34□□□□□ -0.11
PTPRF-209ENST00000438120 FAM19A2Q8N3H0 131 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 SCGB3A1Q96QR1 104 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 RPP21Q9H633 154 aaKnown RBP14.34□□□□□ -0.11
PTPRF-209ENST00000438120 TRAV14DV4A0A0A6YYC5 116 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 DPRXA6NFQ7 191 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 FOXC2Q99958 501 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 RNF222A6NCQ9 220 aa14.34□□□□□ -0.11
PTPRF-209ENST00000438120 UPK2O00526 184 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms