RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 DUX4L9Q6RFH8 374 aaPredicted RBP11.7□□□□□ -0.54
LIG1-202ENST00000427526 IDI2-AS1Q9NZ38 188 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 DSCAML1Q8TD84 2053 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 A0A0G2JNJ9 132 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 FOXH1O75593 365 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 CA2P00918 260 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 TEX38Q6PEX7 206 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 TCF23Q7RTU1 214 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 Q9UFV3 132 aa11.7□□□□□ -0.54
LIG1-202ENST00000427526 MDFIC2A0A1B0GVS7 189 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 PRRG2O14669 202 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 FAM87AP0C7U9 286 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 CCKARP32238 428 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 YPEL3P61236 119 aaPredicted RBP11.69□□□□□ -0.54
LIG1-202ENST00000427526 RHOBP62745 196 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 C3orf36Q3SXR2 165 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 DMRTA1Q5VZB9 504 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 NEUROG1Q92886 237 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 NOL4LQ96MY1 436 aaPredicted RBP11.69□□□□□ -0.54
LIG1-202ENST00000427526 RAB9BQ9NP90 201 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 ZGRF1Q86YA3 2104 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 MYOD1P15172 320 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 RBX1P62877 108 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 RPL31P62899 125 aaKnown RBP11.69□□□□□ -0.54
LIG1-202ENST00000427526 GFRALQ6UXV0 394 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 ZCCHC14Q8WYQ9 949 aaKnown RBP11.69□□□□□ -0.54
LIG1-202ENST00000427526 C11orf52Q96A22 123 aa11.69□□□□□ -0.54
LIG1-202ENST00000427526 SNRNP40Q96DI7 357 aaKnown RBP11.69□□□□□ -0.54
LIG1-202ENST00000427526 FNDC10F2Z333 226 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 K7EN84 100 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 LINC00869P0C866 280 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 STUMQ69YW2 141 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 OR10G8Q8NGN5 311 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 LINC00574Q9H8X3 128 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 GCM1Q9NP62 436 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 LYG1Q8N1E2 194 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 ADTRPQ96IZ2 230 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 TRGV10A0A0A0MS01 117 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 IGFBP2P18065 325 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 RAB31Q13636 194 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 RNF7Q9UBF6 113 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 MSRB2Q9Y3D2 182 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 OR51B2Q9Y5P1 312 aa11.68□□□□□ -0.54
LIG1-202ENST00000427526 PTPRQQ9UMZ3 2332 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 ZNF705GA8MUZ8 300 aaPredicted RBP11.67□□□□□ -0.54
LIG1-202ENST00000427526 AREGP15514 252 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 TMEM256Q8N2U0 113 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 GAFA1Q96PS6 74 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 ICE1Q9Y2F5 2266 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 C9JCJ5 164 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 NUPR1O60356 82 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 HLA-DRB5Q30154 266 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 OR4P4Q8NGL7 312 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 ENY2Q9NPA8 101 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 ZNF257Q9Y2Q1 563 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 LY96Q9Y6Y9 160 aa11.67□□□□□ -0.54
LIG1-202ENST00000427526 A0A1B0GUS0 222 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 MMP23AO75900 390 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 HNF1AP20823 631 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 MRPL41Q8IXM3 137 aaKnown RBP11.66□□□□□ -0.54
LIG1-202ENST00000427526 FAM122AQ96E09 287 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 IL19Q9UHD0 177 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 SLC45A2Q9UMX9 530 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 MT-CO2P00403 227 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 CT45A6P0DMU7 189 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 CT45A5P0DMU8 189 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 CT45A7P0DMV0 189 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 ADMP35318 185 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 CORO2AQ92828 525 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 IL36BQ9NZH7 164 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 PRNDQ9UKY0 176 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 TANC2Q9HCD6 1990 aa11.66□□□□□ -0.54
LIG1-202ENST00000427526 SRRM4A7MD48 611 aaKnown RBP11.65□□□□□ -0.54
LIG1-202ENST00000427526 J3QR06 171 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 IGHV1-46P01743 117 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 PRCDQ00LT1 54 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 ZNF788Q6ZQV5 615 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 MIR17HGQ75NE6 70 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 WFIKKN1Q96NZ8 548 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 SLC25A10Q9UBX3 287 aaPredicted RBP11.65□□□□□ -0.54
LIG1-202ENST00000427526 PCNX1Q96RV3 2341 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 TRAV9-1A0A075B6T8 112 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 IGKV1OR2-108A0A075B7D4 117 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 UPK2O00526 184 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 IGKV1-16P04430 117 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 SELENOTP62341 195 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 SLC25A48Q6ZT89 311 aaKnown RBP11.65□□□□□ -0.54
LIG1-202ENST00000427526 C22orf15Q8WYQ4 148 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 ARL2-SNX15V9GYD0 113 aa11.65□□□□□ -0.54
LIG1-202ENST00000427526 A6NNC1 897 aa11.65□□□□□ -0.55
LIG1-202ENST00000427526 OR4A8P0C604 315 aa11.65□□□□□ -0.55
LIG1-202ENST00000427526 IQCJQ1A5X6 159 aa11.65□□□□□ -0.55
LIG1-202ENST00000427526 EAF1Q96JC9 268 aaPredicted RBP11.65□□□□□ -0.55
LIG1-202ENST00000427526 CCL13Q99616 98 aa11.65□□□□□ -0.55
LIG1-202ENST00000427526 HINT2Q9BX68 163 aa11.65□□□□□ -0.55
LIG1-202ENST00000427526 IGF2RP11717 2491 aa11.64□□□□□ -0.55
LIG1-202ENST00000427526 TLN1Q9Y490 2541 aaKnown RBP11.64□□□□□ -0.55
LIG1-202ENST00000427526 SLC17A3O00476 420 aa11.64□□□□□ -0.55
LIG1-202ENST00000427526 CD40P25942 277 aa11.64□□□□□ -0.55
LIG1-202ENST00000427526 TNFAIP6P98066 277 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms