RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ATP5IP56385 69 aaPredicted RBP13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 EIF5AP63241 154 aaKnown RBP13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 CX3CL1P78423 397 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 NHLH2Q02577 135 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 C9orf152Q5JTZ5 239 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 CLEC9AQ6UXN8 241 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 TMEM14EPQ6UXP3 125 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 OR10P1Q8NGE3 313 aa13.61□□□□□ -0.23
CCDC28B-202ENST00000421922 BORCS7-ASMTA0A0B4J1R7 106 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 INS-IGF2F8WCM5 200 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 DFFBO76075 338 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 LY6G6DO95868 133 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 CLINT1Q14677 625 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 SLC25A24Q6NUK1 477 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 SLC51BQ86UW2 128 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 OR5C1Q8NGR4 320 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 PINX1Q96BK5 328 aaKnown RBP13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 PARP11Q9NR21 331 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 VPREB3Q9UKI3 123 aa13.6□□□□□ -0.23
CCDC28B-202ENST00000421922 C15orf62A8K5M9 175 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 APELAP0DMC3 54 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 UBA52P62987 128 aaKnown RBP13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 SLC38A11Q08AI6 406 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 ZNF266Q14584 549 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 ETV3LQ6ZN32 361 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 SIGLECL1Q8N7X8 197 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 ZNF48Q96MX3 618 aaPredicted RBP13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 SMR3AQ99954 134 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 CDC42EP3Q9UKI2 254 aa13.59□□□□□ -0.23
CCDC28B-202ENST00000421922 IGHV7-81A0A0B4J1V7 117 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 IGLC7A0M8Q6 106 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 CGB1A6NKQ9 187 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 E7EUB6 86 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 CYB5BO43169 146 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 HOXA3O43365 443 aaPredicted RBP13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 REG1AP05451 166 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 SRD5A1P18405 259 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 WT1-ASQ06250 92 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 C2orf83Q53S99 150 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 FAM103A1Q9BTL3 118 aaKnown RBP13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 TMUB1Q9BVT8 246 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 GON7Q9BXV9 100 aa13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 NIPBLQ6KC79 2804 aaeCLIP13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 SONP18583 2426 aaKnown RBP13.58□□□□□ -0.24
CCDC28B-202ENST00000421922 TEX22C9J3V5 150 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 IFNA5P01569 189 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 RNASE2P10153 161 aaKnown RBP13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 DEFA4P12838 97 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 STPG2Q8N412 459 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 ATP5SQ99766 215 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 PRDM13Q9H4Q3 707 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 DNHD1Q96M86 4753 aa13.57□□□□□ -0.24
CCDC28B-202ENST00000421922 A0A1B0GW64 132 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 TSPAN9O75954 239 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 JTBO76095 146 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 TPT1P13693 172 aaKnown RBP13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 AREGP15514 252 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 SSBP2P81877 361 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 ATP6V1FQ16864 119 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 ARSJQ5FYB0 599 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 BSCL2Q96G97 398 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 HSPB9Q9BQS6 159 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 SLA2Q9H6Q3 261 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 SMCO3A2RU48 225 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 SH2D7A6NKC9 451 aaPredicted RBP13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 NDPQ00604 133 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 ECSCRQ19T08 205 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 TUSC1Q2TAM9 212 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 SLC35E3Q7Z769 313 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 TMEM86BQ8N661 226 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 ZNF114Q8NC26 417 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 OR1L6Q8NGR2 347 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 P2RX4Q99571 388 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 TMEM147Q9BVK8 224 aa13.56□□□□□ -0.24
CCDC28B-202ENST00000421922 HIVEP2P31629 2446 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 CORTO00230 105 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 ATP6V0E1O15342 81 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 BSXQ3C1V8 233 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 RPL7L1Q6DKI1 246 aaKnown RBP13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 UNQ5815/PRO19632Q6UWF5 114 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 LFNGQ8NES3 379 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 OR1P1Q8NH06 330 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 SGMS2Q8NHU3 365 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 SCGB1C1Q8TD33 95 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 ZNF418Q8TF45 676 aaPredicted RBP13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 MISP3Q96FF7 219 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 TMEM68Q96MH6 324 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 UQCC1Q9NVA1 299 aa13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 F11RQ9Y624 299 aaKnown RBP13.55□□□□□ -0.24
CCDC28B-202ENST00000421922 UBE2L5PA0A1B0GUS4 154 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 NPIPB5A8MRT5 1133 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 ARL16Q0P5N6 197 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 HAPLN4Q86UW8 402 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 RNASEH2CQ8TDP1 164 aaKnown RBP13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 ST8SIA2Q92186 375 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 GGACTQ9BVM4 153 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 NPFFR1Q9GZQ6 430 aa13.54□□□□□ -0.24
CCDC28B-202ENST00000421922 RPS10-NUDT3A0A1W2PQS6 291 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 IFNA7P01567 189 aa13.53□□□□□ -0.24
CCDC28B-202ENST00000421922 AMY1AP04745 511 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms