RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 HNF1AP20823 631 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 CNTFRP26992 372 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 VDAC2P45880 294 aaPredicted RBP4.77□□□□□ -1.65
HMGB3-202ENST00000419110 DLK1P80370 383 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 NHLH2Q02577 135 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 SCGB2A2Q13296 93 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 HNF4GQ14541 408 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 ETV3LQ6ZN32 361 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 C16orf82Q7Z2V1 217 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 DYNAPQ8N1N2 210 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 Q8N6K4 173 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 HSD17B11Q8NBQ5 300 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 ZNF114Q8NC26 417 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 MAPK1IP1LQ8NDC0 245 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 WFDC11Q8NEX6 87 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 NPBQ8NG41 125 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 NANPQ8TBE9 248 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 TMED6Q8WW62 240 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 SLC35E1Q96K37 410 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 RASL11BQ9BPW5 248 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 SLC25A33Q9BSK2 321 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 GGACTQ9BVM4 153 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 PARD6GQ9BYG4 376 aaPredicted RBP4.77□□□□□ -1.65
HMGB3-202ENST00000419110 CYTL1Q9NRR1 136 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 NDUFA4L2Q9NRX3 87 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 PITPNC1Q9UKF7 332 aa4.77□□□□□ -1.65
HMGB3-202ENST00000419110 TEX50A0A1B0GTY4 177 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 RPS10-NUDT3A0A1W2PQS6 291 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 IGLC7A0M8Q6 106 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 FNDC10F2Z333 226 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 C17orf112F2Z3M2 114 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 M0QZK8 103 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 SMAD7O15105 426 aaKnown RBP4.76□□□□□ -1.65
HMGB3-202ENST00000419110 FGF16O43320 207 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 SOX15O60248 233 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 MPDU1O75352 247 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CFDP00746 253 aaPredicted RBP4.76□□□□□ -1.65
HMGB3-202ENST00000419110 PRH1P02810 166 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CRYGBP07316 175 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 OR13C7P0DN81 318 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 RNASE2P10153 161 aaKnown RBP4.76□□□□□ -1.65
HMGB3-202ENST00000419110 MYOD1P15172 320 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 FGF7P21781 194 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CD24P25063 80 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 PAX6P26367 422 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 OPRK1P41145 380 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 EBI3Q14213 229 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 AANATQ16613 207 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 C2orf83Q53S99 150 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CLLU1Q5K131 121 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 AKR1C8PQ5T2L2 129 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CSPG4Q6UVK1 2322 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 CLEC9AQ6UXN8 241 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 SLC16A13Q7RTY0 426 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 HAPLN4Q86UW8 402 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 ZNF709Q8N972 641 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 OR5R1Q8NH85 324 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 RNASEH2CQ8TDP1 164 aaKnown RBP4.76□□□□□ -1.65
HMGB3-202ENST00000419110 C17orf50Q8WW18 174 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 GINS3Q9BRX5 216 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 PSMG3Q9BT73 122 aaPredicted RBP4.76□□□□□ -1.65
HMGB3-202ENST00000419110 SLC25A32Q9H2D1 315 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 PFDN2Q9UHV9 154 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 TIMM9Q9Y5J7 89 aa4.76□□□□□ -1.65
HMGB3-202ENST00000419110 TLN2Q9Y4G6 2542 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 UMAD1C9J7I0 102 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 H3BUX3 64 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 TRIM77I1YAP6 450 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 FBXO24O75426 580 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SCGB2A1O75556 95 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 FSHBP01225 129 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SEC11BP0C7V7 166 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 ATP6V0CP27449 155 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 CAMLGP49069 296 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 RAB5CP51148 216 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 RUNX1Q01196 453 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 ZNF616Q08AN1 781 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 RAB31Q13636 194 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 FXYD3Q14802 87 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 VWC2Q2TAL6 325 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 BSXQ3C1V8 233 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 KLF17Q5JT82 389 aaPredicted RBP4.75□□□□□ -1.65
HMGB3-202ENST00000419110 FAM74A1Q5RGS3 127 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 ETFRF1Q6IPR1 90 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SPNS3Q6ZMD2 512 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 TMEM182Q6ZP80 229 aaPredicted RBP4.75□□□□□ -1.65
HMGB3-202ENST00000419110 C9orf139Q6ZV77 190 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 OR10W1Q8NGF6 305 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 OR1L6Q8NGR2 347 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 RNF141Q8WVD5 230 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SSMEM1Q8WWF3 244 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 TAF15Q92804 592 aaKnown RBP eCLIP4.75□□□□□ -1.65
HMGB3-202ENST00000419110 BSCL2Q96G97 398 aaPredicted RBP4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SSX3Q99909 188 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 WDR61Q9GZS3 305 aaKnown RBP4.75□□□□□ -1.65
HMGB3-202ENST00000419110 SH3BGRL3Q9H299 93 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 ARV1Q9H2C2 271 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 WFDC1Q9HC57 220 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 PARP11Q9NR21 331 aa4.75□□□□□ -1.65
HMGB3-202ENST00000419110 FBXO7Q9Y3I1 522 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms