RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CDK10Q15131 360 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 PDLIM3Q53GG5 364 aaPredicted RBP4.95□□□□□ -1.62
USP40-202ENST00000409945 MOB3BQ86TA1 216 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 LINC00311Q8N616 119 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 OR51D1Q8NGF3 324 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 OR5AP2Q8NGF4 316 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 TM2D1Q9BX74 207 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 TAF9BQ9HBM6 251 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 HRASLSQ9HDD0 168 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 JPT1Q9UK76 154 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 TENM1Q9UKZ4 2725 aa4.95□□□□□ -1.62
USP40-202ENST00000409945 TMEM14DPA8MWL7 114 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 C12orf77C9JDV5 145 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 K7EQM0 130 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 HBZP02008 142 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 CRYGCP07315 174 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 CGB3P0DN86 165 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 CGB7P0DN87 165 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 ANXA3P12429 323 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 VEGFCP49767 419 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 ZNF816Q0VGE8 651 aaPredicted RBP4.94□□□□□ -1.62
USP40-202ENST00000409945 TMEM187Q14656 261 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 TGIF2LXQ8IUE1 241 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 OR2T10Q8NGZ9 312 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 IL1F10Q8WWZ1 152 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 HYLS1Q96M11 299 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 S1PR3Q99500 378 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 C20orf85Q9H1P6 137 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 OR51J1Q9H342 316 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 C12orf4Q9NQ89 552 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 KLK11Q9UBX7 282 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 MTFP1Q9UDX5 166 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 ZNF107Q9UII5 783 aaPredicted RBP4.94□□□□□ -1.62
USP40-202ENST00000409945 MOB4Q9Y3A3 225 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 FBN3Q75N90 2809 aa4.94□□□□□ -1.62
USP40-202ENST00000409945 A0A087WW49 117 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 IGHV3-43A0A0B4J1X8 118 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 TRAV39A0A0B4J263 110 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 IGHV3-7P01780 117 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 IGHV3-43DP0DP04 118 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 PAX6P26367 422 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 PRSS3P35030 304 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 CCR6P51684 374 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 POLR2GP62487 172 aaKnown RBP eCLIP4.93□□□□□ -1.62
USP40-202ENST00000409945 KIR2DS1Q14954 304 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 OR10K2Q6IF99 312 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 C6orf201Q7Z4U5 140 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 LYPD6Q86Y78 171 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 DYNAPQ8N1N2 210 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 GAPTQ8N292 157 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 OR4X2Q8NGF9 303 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 GRPEL2Q8TAA5 225 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 ZFAND1Q8TCF1 268 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 LEAP2Q969E1 77 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 RAB3CQ96E17 227 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 CMSS1Q9BQ75 279 aaKnown RBP4.93□□□□□ -1.62
USP40-202ENST00000409945 FAAP24Q9BTP7 215 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 PIPOXQ9P0Z9 390 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 A0A087WZ39 114 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 NCBP2LA6PVI3 153 aaKnown RBP4.93□□□□□ -1.62
USP40-202ENST00000409945 SERPINE3A8MV23 424 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 C15orf65H3BRN8 121 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 FGF16O43320 207 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 CHST1O43916 411 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 YPEL1O60688 119 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 SNAPC5O75971 98 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 NDUFB6O95139 128 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 RPA2P15927 270 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 RCC1P18754 421 aaPredicted RBP4.93□□□□□ -1.62
USP40-202ENST00000409945 ZBTB25P24278 435 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 CD1BP29016 333 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 RCVRNP35243 200 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 EFNB2P52799 333 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 SLC35B1P78383 322 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 IFITM2Q01629 132 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 ARFRP1Q13795 201 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 LRRC37A5PQ49AS3 106 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 ABCA11PQ4W5N1 156 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 SLC25A48Q6ZT89 311 aaKnown RBP4.93□□□□□ -1.62
USP40-202ENST00000409945 LYG1Q8N1E2 194 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 DRAM1Q8N682 238 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 MRPL30Q8TCC3 161 aaKnown RBP4.93□□□□□ -1.62
USP40-202ENST00000409945 PIFOQ8TCI5 191 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 YPEL2Q96QA6 119 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 RASL11BQ9BPW5 248 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 SULT4A1Q9BR01 284 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 LPAR5Q9H1C0 372 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 ATG5Q9H1Y0 275 aa4.93□□□□□ -1.62
USP40-202ENST00000409945 IGHV1-3A0A0C4DH29 117 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 A0A1W2PPE3 182 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 SNRPGP15A8MWD9 76 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 LY6LH3BQJ8 138 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 RAB29O14966 203 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 SSNA1O43805 119 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 DUS4LO95620 317 aaKnown RBP4.92□□□□□ -1.62
USP40-202ENST00000409945 MOSP00540 346 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 IGKV1D-33P01593 117 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 IGKV1-33P01594 117 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 IL5P05113 134 aa4.92□□□□□ -1.62
USP40-202ENST00000409945 AKAIN1P0CW23 69 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms