RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 SUB1P53999 127 aaKnown RBP eCLIP14.21□□□□□ -0.13
SDC1-203ENST00000403076 SPANXN5Q5MJ07 72 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 ASPHD1Q5U4P2 390 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 STPG2Q8N412 459 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 DCUN1D4Q92564 292 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 RNF126Q9BV68 326 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 ZNF355PQ9NSJ1 428 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 STRAPQ9Y3F4 350 aaKnown RBP14.21□□□□□ -0.13
SDC1-203ENST00000403076 U3KQ87 197 aa14.21□□□□□ -0.13
SDC1-203ENST00000403076 FXYD6-FXYD2A0A087WZ82 144 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 TMEM50AO95807 157 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 CRIP2P52943 208 aaPredicted RBP14.2□□□□□ -0.14
SDC1-203ENST00000403076 PAX9P55771 341 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 TAS2R30P59541 319 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 CD300CQ08708 224 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 TTC9CQ8N5M4 171 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 SLC24A4Q8NFF2 622 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 GON7Q9BXV9 100 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 WNT10AQ9GZT5 417 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 NPIPB5A8MRT5 1133 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 NPY1RP25929 384 aa14.2□□□□□ -0.14
SDC1-203ENST00000403076 FAM110DQ8TAY7 271 aaPredicted RBP14.2□□□□□ -0.14
SDC1-203ENST00000403076 FAM24AA6NFZ4 105 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 TSC22D2O75157 780 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 FBXO24O75426 580 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 RNASE2P10153 161 aaKnown RBP14.19□□□□□ -0.14
SDC1-203ENST00000403076 CTRB1P17538 263 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 NUP62P37198 522 aaPredicted RBP14.19□□□□□ -0.14
SDC1-203ENST00000403076 RAB11AP62491 216 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 CTRB2Q6GPI1 263 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 SLC25A24Q6NUK1 477 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 C19orf35Q6ZS72 473 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 NOXA1Q86UR1 476 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 P2RX4Q99571 388 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 C11orf1Q9H5F2 150 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 ZC4H2Q9NQZ6 224 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 ZNF580Q9UK33 172 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 JMJD1CQ15652 2540 aa14.19□□□□□ -0.14
SDC1-203ENST00000403076 G3V3Q6 166 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 CYB5BO43169 146 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 NDUFA7O95182 113 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 IFNA4P05014 189 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 OR8U8P0C7N1 319 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 SLC25A4P12235 298 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 P2RY1P47900 373 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 SLC35B1P78383 322 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 CENPVQ7Z7K6 275 aaPredicted RBP14.18□□□□□ -0.14
SDC1-203ENST00000403076 ZNF546Q86UE3 836 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 OR4F5Q8NH21 305 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 OR4C12Q96R67 309 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 C16orf95Q9H693 158 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 LYRM2Q9NU23 88 aaPredicted RBP14.18□□□□□ -0.14
SDC1-203ENST00000403076 SERTAD4Q9NUC0 356 aa14.18□□□□□ -0.14
SDC1-203ENST00000403076 F11RQ9Y624 299 aaKnown RBP14.18□□□□□ -0.14
SDC1-203ENST00000403076 PRH1P02810 166 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 CRYGCP07315 174 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 LYL1P12980 280 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 ATP5IP56385 69 aaPredicted RBP14.17□□□□□ -0.14
SDC1-203ENST00000403076 C2orf83Q53S99 150 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 ZNF329Q86UD4 541 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 OR1L6Q8NGR2 347 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 OR1P1Q8NH06 330 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 SLC25A31Q9H0C2 315 aa14.17□□□□□ -0.14
SDC1-203ENST00000403076 PSMB11A5LHX3 300 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 C15orf62A8K5M9 175 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 METTL15P1P0C7V9 234 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 ZFP69Q49AA0 526 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 C19orf54Q5BKX5 351 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 INO80EQ8NBZ0 244 aaPredicted RBP14.16□□□□□ -0.14
SDC1-203ENST00000403076 ZNF114Q8NC26 417 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 LINC01006Q8NI28 216 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 MS4A10Q96PG2 267 aa14.16□□□□□ -0.14
SDC1-203ENST00000403076 C1QBP02746 253 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 PF4V1P10720 104 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 RPL12P30050 165 aaKnown RBP14.15□□□□□ -0.14
SDC1-203ENST00000403076 PPIFP30405 207 aaKnown RBP14.15□□□□□ -0.14
SDC1-203ENST00000403076 BSXQ3C1V8 233 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 OR8G2PQ6IF36 304 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 ETV3LQ6ZN32 361 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 STX12Q86Y82 276 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 TMEM252Q8N6L7 170 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 MISP3Q96FF7 219 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 IGSF23A1L1A6 192 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 ARPC5O15511 151 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 SOX15O60248 233 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 HKR1P10072 659 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 HIST1H1BP16401 226 aaKnown RBP14.15□□□□□ -0.14
SDC1-203ENST00000403076 TMEM14EPQ6UXP3 125 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 OR11H4Q8NGC9 324 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 TMEM170AQ8WVE7 144 aa14.15□□□□□ -0.14
SDC1-203ENST00000403076 PINX1Q96BK5 328 aaKnown RBP14.15□□□□□ -0.14
SDC1-203ENST00000403076 NIPBLQ6KC79 2804 aaeCLIP14.14□□□□□ -0.15
SDC1-203ENST00000403076 CST7O76096 145 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 MFAP2P55001 183 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 CFHR3Q02985 330 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 TEX38Q6PEX7 206 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 TMEM65Q6PI78 240 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.14□□□□□ -0.15
SDC1-203ENST00000403076 THYN1Q9P016 225 aa14.14□□□□□ -0.15
SDC1-203ENST00000403076 RNF114Q9Y508 228 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms