RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 RUNX1Q01196 453 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 RAB32Q13637 225 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 EXOSC2Q13868 293 aaKnown RBP11.34□□□□□ -0.59
SEC13-208ENST00000397109 KIAA0141Q14154 515 aaPredicted RBP11.34□□□□□ -0.59
SEC13-208ENST00000397109 FXYD3Q14802 87 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 SP6Q3SY56 376 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 VMA21Q3ZAQ7 101 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 CLLU1Q5K131 121 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 UNQ5815/PRO19632Q6UWF5 114 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 TEX45Q8NA69 505 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 OSR1Q8TAX0 266 aaPredicted RBP11.34□□□□□ -0.59
SEC13-208ENST00000397109 DPF1Q92782 380 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 GSKIPQ9P0R6 139 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 TNCP24821 2201 aa11.34□□□□□ -0.59
SEC13-208ENST00000397109 MPTX1A8MV57 137 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 E5RGE8 158 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 DEDDO75618 318 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 CNIH1O95406 144 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 CRYZL1O95825 349 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 HTR2BP41595 481 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 EIF5AP63241 154 aaKnown RBP11.33□□□□□ -0.6
SEC13-208ENST00000397109 TMEM268Q5VZI3 342 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 LYZL2Q7Z4W2 148 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 SELENOHQ8IZQ5 122 aaKnown RBP11.33□□□□□ -0.6
SEC13-208ENST00000397109 LFNGQ8NES3 379 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 SCARB1Q8WTV0 552 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 DCUN1D4Q92564 292 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 LSM10Q969L4 123 aaKnown RBP11.33□□□□□ -0.6
SEC13-208ENST00000397109 TMEM68Q96MH6 324 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 DUX3Q96PT4 197 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 ARPC5LQ9BPX5 153 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 TPSG1Q9NRR2 321 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 NSG2Q9Y328 171 aa11.33□□□□□ -0.6
SEC13-208ENST00000397109 SRRM4A7MD48 611 aaKnown RBP11.32□□□□□ -0.6
SEC13-208ENST00000397109 ST8SIA3O43173 380 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 RBFOX2O43251 390 aaKnown RBP eCLIP11.32□□□□□ -0.6
SEC13-208ENST00000397109 SOX15O60248 233 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 ATG12O94817 140 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 SERPINE2P07093 398 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 UBE2KP61086 200 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 RPL30P62888 115 aaKnown RBP11.32□□□□□ -0.6
SEC13-208ENST00000397109 CATR1Q13166 79 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 DEFB136Q30KP8 78 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 SLC35G3Q8N808 338 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 FAM103A1Q9BTL3 118 aaKnown RBP11.32□□□□□ -0.6
SEC13-208ENST00000397109 PRR13Q9NZ81 148 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 ZMAT5Q9UDW3 170 aaKnown RBP11.32□□□□□ -0.6
SEC13-208ENST00000397109 LINC00862A6NCI5 91 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 H0YIZ8 118 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 I3L521 148 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 FCGR3BO75015 233 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 PRB2P02812 416 aaPredicted RBP11.32□□□□□ -0.6
SEC13-208ENST00000397109 KIR2DS2P43631 304 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 BRWD1-AS2P59051 145 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 GNB1P62873 340 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 OR11H1Q8NG94 326 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 OR4D5Q8NGN0 318 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 LHFPL5Q8TAF8 219 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 STOML3Q8TAV4 291 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 TCTEX1D2Q8WW35 142 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 GNB4Q9HAV0 340 aa11.32□□□□□ -0.6
SEC13-208ENST00000397109 PRKDCP78527 4128 aaKnown RBP11.31□□□□□ -0.6
SEC13-208ENST00000397109 DNAH3Q8TD57 4116 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 TGP01266 2768 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 A0A1B0GU03 582 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 H3BUA1 57 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 TNFSF12O43508 249 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 OR8U8P0C7N1 319 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 PVALBP20472 110 aaPredicted RBP11.31□□□□□ -0.6
SEC13-208ENST00000397109 ZNF616Q08AN1 781 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 PJVKQ0ZLH3 352 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 FHL3Q13643 280 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 NMSQ5H8A3 153 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 THOC7Q6I9Y2 204 aaKnown RBP11.31□□□□□ -0.6
SEC13-208ENST00000397109 FAM219AQ8IW50 185 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 OR1N2Q8NGR9 330 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 OR4S2Q8NH73 311 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 LRRC20Q8TCA0 184 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 CD300LFQ8TDQ1 290 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 GPHA2Q96T91 129 aa11.31□□□□□ -0.6
SEC13-208ENST00000397109 AURKAIP1Q9NWT8 199 aaPredicted RBP11.31□□□□□ -0.6
SEC13-208ENST00000397109 ACTL6BO94805 426 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 CFDP00746 253 aaPredicted RBP11.3□□□□□ -0.6
SEC13-208ENST00000397109 P2RY1P47900 373 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 EGFEM1PQ0D2K5 195 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 PRSS8Q16651 343 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 SLC7A5P1Q8MH63 180 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 OR1S1Q8NH92 325 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 MRAPQ8TCY5 172 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 ST8SIA2Q92186 375 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 SLC25A32Q9H2D1 315 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 MED9Q9NWA0 146 aa11.3□□□□□ -0.6
SEC13-208ENST00000397109 K7EPK0 472 aa11.29□□□□□ -0.6
SEC13-208ENST00000397109 MBPP02686 304 aaPredicted RBP11.29□□□□□ -0.6
SEC13-208ENST00000397109 SAA1P0DJI8 122 aaPredicted RBP11.29□□□□□ -0.6
SEC13-208ENST00000397109 TPT1P13693 172 aaKnown RBP11.29□□□□□ -0.6
SEC13-208ENST00000397109 NKX2-1P43699 371 aaPredicted RBP11.29□□□□□ -0.6
SEC13-208ENST00000397109 TPPP2P59282 170 aa11.29□□□□□ -0.6
SEC13-208ENST00000397109 S100A10P60903 97 aa11.29□□□□□ -0.6
SEC13-208ENST00000397109 SSBP2P81877 361 aaPredicted RBP11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms