RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SNAPC5O75971 98 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 KRASP01116 189 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 ELLP55199 621 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-202ENST00000394943 CYCSP99999 105 aaKnown RBP5.42□□□□□ -1.54
LIMA1-202ENST00000394943 NOXA1Q86UR1 476 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 OR5AU1Q8NGC0 362 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 OR52B4Q8NGK2 314 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 OR4A16Q8NH70 328 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 RAB40CQ96S21 281 aa5.42□□□□□ -1.54
LIMA1-202ENST00000394943 A0A0G2JLM5 398 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 DEDDO75618 318 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 GIPP09681 153 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 CD28P10747 220 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 TNXAQ16473 311 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 CXorf58Q96LI9 332 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 CCDC140Q96MF4 163 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 AREGP15514 252 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 H2BFSP57053 126 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 IL34Q6ZMJ4 242 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 GPHB5Q86YW7 130 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 OR4X1Q8NH49 305 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 RBMXL1Q96E39 390 aaKnown RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 RRNAD1Q96FB5 475 aaKnown RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 COMMD5Q9GZQ3 224 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 ACANP16112 2415 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 MPTX1A8MV57 137 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 G3V318 75 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM50AO95807 157 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 MBPP02686 304 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 RRAS2P62070 204 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 KLF5Q13887 457 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-202ENST00000394943 TRIM16LQ309B1 348 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 OR2B11Q5JQS5 317 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM65Q6PI78 240 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 LINC00482Q8N8I6 264 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 OR11H7Q8NGC8 314 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 OR4X2Q8NGF9 303 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 OR2K2Q8NGT1 345 aa5.41□□□□□ -1.54
LIMA1-202ENST00000394943 HSPB1P04792 205 aaKnown RBP5.4□□□□□ -1.54
LIMA1-202ENST00000394943 MYOD1P15172 320 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 PLP1P60201 277 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 HNF4GQ14541 408 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 TMEM95Q3KNT9 176 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 C10orf55Q5SWW7 151 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 SPSB3Q6PJ21 355 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 TMED4Q7Z7H5 227 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 CENPVQ7Z7K6 275 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-202ENST00000394943 RNF126Q9BV68 326 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 PARP11Q9NR21 331 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 GAR1Q9NY12 217 aaKnown RBP5.4□□□□□ -1.54
LIMA1-202ENST00000394943 U3KQE9 123 aa5.4□□□□□ -1.54
LIMA1-202ENST00000394943 HMX3A6NHT5 357 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 K7EMT4 169 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 SYNGR2O43760 224 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 ADAP1O75689 374 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 P2RY1P47900 373 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 EGFEM1PQ0D2K5 195 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 CXorf66Q5JRM2 361 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-202ENST00000394943 UNQ5815/PRO19632Q6UWF5 114 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 LILRB2Q8N423 598 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 LFNGQ8NES3 379 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 PLEKHA3Q9HB20 300 aa5.4□□□□□ -1.55
LIMA1-202ENST00000394943 LYRM2Q9NU23 88 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-202ENST00000394943 TRAV6A0A075B6T7 132 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 TRAV14DV4A0A0A6YYC5 116 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 IFNA21P01568 189 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 DLK1P80370 383 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 C10orf99Q6UWK7 81 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 OR10W1Q8NGF6 305 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 DTD1Q8TEA8 209 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 BSCL2Q96G97 398 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 OR4C12Q96R67 309 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 SLC45A2Q9UMX9 530 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 LSM4Q9Y4Z0 139 aaKnown RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 SH2D7A6NKC9 451 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 CYB5BO43169 146 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 YPEL3P61236 119 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 ERHP84090 104 aaKnown RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 DUX5Q96PT3 197 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 KLK15Q9H2R5 256 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 GNB4Q9HAV0 340 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 PRR13Q9NZ81 148 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 IGKV1D-37A0A075B6S9 117 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 RPLP1P05386 114 aaKnown RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 OR8U8P0C7N1 319 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 RAB25P57735 213 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 RPP30P78346 268 aaKnown RBP5.39□□□□□ -1.55
LIMA1-202ENST00000394943 CD69Q07108 199 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 GSG1LQ6UXU4 331 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 TCTE3Q8IZS6 198 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 RAX2Q96IS3 184 aa5.39□□□□□ -1.55
LIMA1-202ENST00000394943 H0YIZ8 118 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 NDUFB8O95169 186 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 SUB1P53999 127 aaKnown RBP eCLIP5.38□□□□□ -1.55
LIMA1-202ENST00000394943 BAXQ07812 192 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 PRSS54Q6PEW0 395 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 HAPLN4Q86UW8 402 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 SLC24A4Q8NFF2 622 aa5.38□□□□□ -1.55
LIMA1-202ENST00000394943 CITED2Q99967 270 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-202ENST00000394943 FNDC4Q9H6D8 234 aaPredicted RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms