RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 TEX43Q6ZNM6 134 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 HCSTQ9UBK5 93 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 GLI4P10075 376 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 SPATA46Q5T0L3 261 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 BMPERQ8N8U9 685 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 SCN10AQ9Y5Y9 1956 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 COL9A1P20849 921 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 LINC00696Q6ZRV3 163 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 ABHD17AQ96GS6 310 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 MYH4Q9Y623 1939 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 IGFL2Q6UWQ7 119 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 THBDP07204 575 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 GGNQ86UU5 652 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 FAM57AQ8TBR7 257 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 C17orf100A8MU93 164 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 GDF9O60383 454 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 DUSP14O95147 198 aaKnown RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PCP4P48539 62 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PPP1R32Q7Z5V6 425 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 R4GN57 208 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 ZNF236Q9UL36 1845 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PSG3Q16557 428 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 CENPWQ5EE01 88 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 ITGB4P16144 1822 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 HBDP02042 147 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 WDR82Q6UXN9 313 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 SPATA45Q537H7 98 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 MBD3L4A6NDZ8 208 aaPredicted RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 MBD3L3A6NE82 208 aaPredicted RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 MBD3L5A6NJ08 208 aaPredicted RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 RFLNBQ8N5W9 214 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 MBD3L2Q8NHZ7 208 aaPredicted RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PRTN3P24158 256 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PRSS8Q16651 343 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 RPS27P42677 84 aaKnown RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 SPINK14Q6IE38 97 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 DGAT2L7PQ6IED9 249 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 SCGB1D4Q6XE38 83 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 OR11H12B2RN74 326 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 OR11H1Q8NG94 326 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 OR11H2Q8NH07 326 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 PARP12Q9H0J9 701 aaKnown RBP4.1□□□□□ -1.75
PCDH9-201ENST00000377861 AZU1P20160 251 aa4.1□□□□□ -1.75
PCDH9-201ENST00000377861 HIGD1CA8MV81 97 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 C4orf51C9J302 202 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 RAMP3O60896 148 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 GAGE12BA1L429 117 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 H3BRM9 83 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 MST1LQ2TV78 715 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 Q6P435 159 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 COQ2Q96H96 371 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 DEPPQ9NTK1 212 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 MAGEA5P43359 124 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 C9orf50Q5SZB4 431 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 SPANXN1Q5VSR9 72 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 SYS1-DBNDD2H3BUS1 97 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 ZNF775Q96BV0 537 aaPredicted RBP4.09□□□□□ -1.75
PCDH9-201ENST00000377861 FOXF2Q12947 444 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 GGTLC1Q9BX51 225 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 TMEM74BQ9NUR3 256 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 BTAF1O14981 1849 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 LINC00305Q7Z4B0 112 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 CCL17Q92583 94 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 FAM223BA6NKX1 122 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 CLEC12BQ2HXU8 276 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 LGALS9BQ3B8N2 356 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 SNAI3Q3KNW1 292 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 LGALS9CQ6DKI2 356 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 FAM223AQ8IWN6 122 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 WFDC12Q8WWY7 111 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 DEFB127Q9H1M4 99 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 ZNF137PP52743 207 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 B3GALT5-AS1P59052 145 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 MYH13Q9UKX3 1938 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 A0A1W2PRS3 328 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 COL8A2P25067 703 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 CCL25O15444 150 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 RNF166Q96A37 237 aaPredicted RBP4.09□□□□□ -1.75
PCDH9-201ENST00000377861 C14orf144Q96I85 54 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 ZNF71Q9NQZ8 489 aaPredicted RBP4.09□□□□□ -1.75
PCDH9-201ENST00000377861 PRR20EP86478 221 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 PRR20CP86479 221 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 PRR20DP86480 221 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 PRR20BP86481 221 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 PRR20AP86496 221 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 TTC32Q5I0X7 151 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 CLPSP04118 112 aa4.09□□□□□ -1.75
PCDH9-201ENST00000377861 RSPO1Q2MKA7 263 aaPredicted RBP4.09□□□□□ -1.75
PCDH9-201ENST00000377861 TRAV26-1A0A087WT03 109 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 TEX36Q5VZQ5 186 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 PPIAL4CA0A0B4J2A2 164 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 PF4P02776 101 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 EBLN2Q6P2I7 272 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 COL5A3P25940 1745 aaPredicted RBP4.09□□□□□ -1.76
PCDH9-201ENST00000377861 TNFSF12O43508 249 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 CD40P25942 277 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 EDDM3AQ14507 147 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 DNAJC30Q96LL9 226 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 IGHV3-20A0A0C4DH32 117 aa4.09□□□□□ -1.76
PCDH9-201ENST00000377861 H3BSH0 61 aa4.09□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms