RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 H2BFWTQ7Z2G1 175 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 GPR141Q7Z602 305 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 SCARB1Q8WTV0 552 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 TMEM190Q8WZ59 177 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 BSCL2Q96G97 398 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 ZNF486Q96H40 463 aaPredicted RBP16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 WFDC10AQ9H1F0 79 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 C21orf62Q9NYP8 219 aa16.3■□□□□ 0.2
CCDC28B-201ENST00000373602 IGHV3-21A0A0B4J1V1 117 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 RBMY1BA6NDE4 496 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 RBMY1EA6NEQ0 496 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 K7EIM0 57 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 RBMY1DP0C7P1 496 aaKnown RBP16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 LYL1P12980 280 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 SPSB3Q6PJ21 355 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 BTNL8Q6UX41 500 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 SLC16A13Q7RTY0 426 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 OR1P1Q8NH06 330 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 OR4A16Q8NH70 328 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 MRGPRFQ96AM1 343 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 MIXL1Q9H2W2 232 aa16.29■□□□□ 0.2
CCDC28B-201ENST00000373602 TRAV25A0A0B4J276 109 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 F8W735 103 aaPredicted RBP16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 PGAM2P15259 253 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 OR2C3Q8N628 320 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 ISOC1Q96CN7 298 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 HIPK2Q9H2X6 1198 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 SRD5A3Q9H8P0 318 aa16.28■□□□□ 0.2
CCDC28B-201ENST00000373602 DNAH7Q8WXX0 4024 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 CD74P04233 296 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 PI3P19957 117 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 PIGPP57054 158 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 PRCDQ00LT1 54 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 TMEM229BQ8NBD8 167 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 CHRDL1Q9BU40 450 aa16.27■□□□□ 0.2
CCDC28B-201ENST00000373602 NDUFA4O00483 81 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 SCAF4O95104 1147 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 ADMP35318 185 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 TAS2R19P59542 299 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 HSPE1P61604 102 aaKnown RBP16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 SPCS2Q15005 226 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 ANKRD55Q3KP44 614 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 ZNF114Q8NC26 417 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 OR4D10Q8NGI6 311 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 OR52B4Q8NGK2 314 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 C5orf66Q9H5L9 145 aa16.26■□□□□ 0.19
CCDC28B-201ENST00000373602 RYR3Q15413 4870 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 CTDSP2O14595 271 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 Q56UQ5 140 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 RBPMS2Q6ZRY4 209 aaKnown RBP16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 UBAC2Q8NBM4 344 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 TERB2Q8NHR7 220 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 TP53RKQ96S44 253 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 RETNQ9HD89 108 aa16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 DAZ1Q9NQZ3 744 aaKnown RBP16.25■□□□□ 0.19
CCDC28B-201ENST00000373602 GABARAPH6UMI1 98 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 RGS5O15539 181 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 RAB3DO95716 219 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 IGKV1-5P01602 117 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 P0C879 139 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 PPP5CP53041 499 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 SSBP1Q04837 148 aaKnown RBP16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 ZFAND1Q8TCF1 268 aa16.24■□□□□ 0.19
CCDC28B-201ENST00000373602 C3orf85A0A1B0GTC6 90 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 I3L2K1 104 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 K7EMT4 169 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 CTSGP08311 255 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 FCGR2BP31994 310 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 MRPS10P82664 201 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 IZUMO4Q1ZYL8 232 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 STEAP1BQ6NZ63 245 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 CLVS1Q8IUQ0 354 aaPredicted RBP16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 GAR1Q9NY12 217 aaKnown RBP16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 COPZ2Q9P299 210 aa16.23■□□□□ 0.19
CCDC28B-201ENST00000373602 ERHP84090 104 aaKnown RBP16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 CCDC71LQ8N9Z2 235 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 OR13C8Q8NGS7 320 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 RAB2BQ8WUD1 216 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 MISP3Q96FF7 219 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 ZNF414Q96IQ9 312 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 TXN2Q99757 166 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 SPAG8Q99932 426 aaPredicted RBP16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 C20orf24Q9BUV8 137 aa16.22■□□□□ 0.19
CCDC28B-201ENST00000373602 A0A0B4J293 547 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 ATG12O94817 140 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 CTSDP07339 412 aaPredicted RBP16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 AKR1C2P52895 323 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 MFAP4P55083 255 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 SCGB2B2Q4G0G5 96 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 ZFAND6Q6FIF0 208 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 FAM110AQ9BQ89 295 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 BCL7BQ9BQE9 202 aa16.21■□□□□ 0.19
CCDC28B-201ENST00000373602 DYNC2H1Q8NCM8 4307 aaKnown RBP16.21■□□□□ 0.18
CCDC28B-201ENST00000373602 IGHV3OR16-8A0A075B7F1 116 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 C15orf62A8K5M9 175 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 INS-IGF2F8WCM5 200 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 TSPAN4O14817 238 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 MT-CO2P00403 227 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 UCP1P25874 307 aa16.2■□□□□ 0.18
CCDC28B-201ENST00000373602 MEF2DQ14814 521 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms