RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 LAMA5O15230 3695 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 ZNF891A8MT65 544 aaPredicted RBP11.3□□□□□ -0.6
USP49-201ENST00000373006 SPINT2O43291 252 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 AGFG2O95081 481 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 IGFBP2P18065 325 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 GATA2P23769 480 aaPredicted RBP11.3□□□□□ -0.6
USP49-201ENST00000373006 UTF1Q5T230 341 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 TEPPQ6URK8 271 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 TCTEX1D1Q8N7M0 179 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 GMPPAQ96IJ6 420 aaPredicted RBP11.3□□□□□ -0.6
USP49-201ENST00000373006 GNB1LQ9BYB4 327 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 TMEM140Q9NV12 185 aa11.3□□□□□ -0.6
USP49-201ENST00000373006 TET2Q6N021 2002 aaPredicted RBP11.29□□□□□ -0.6
USP49-201ENST00000373006 TPRP12270 2363 aaKnown RBP11.29□□□□□ -0.6
USP49-201ENST00000373006 TRGV10A0A0A0MS01 117 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 J3QW42 95 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 FABP6P51161 128 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 MOB3BQ86TA1 216 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 NHLRC2Q8NBF2 726 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 TCF19Q9Y242 345 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 WASHC3Q9Y3C0 194 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 LSM4Q9Y4Z0 139 aaKnown RBP11.29□□□□□ -0.6
USP49-201ENST00000373006 OR10J4P0C629 311 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 CTRLP40313 264 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 ZNF134P52741 427 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 ERVK-16P61578 105 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 WDR82Q6UXN9 313 aa11.29□□□□□ -0.6
USP49-201ENST00000373006 NAA38Q9BRA0 125 aaKnown RBP11.29□□□□□ -0.6
USP49-201ENST00000373006 WISP2O76076 250 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 C3orf79P0CE67 100 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 TMEM136Q6ZRR5 245 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 COX11Q9Y6N1 276 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 TECTAO75443 2155 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 TRAV9-1A0A075B6T8 112 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 IQCF6A8MYZ5 107 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 C9JCJ5 164 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 CX3CL1P78423 397 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 ARG2P78540 354 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 C1orf229Q6ZS94 237 aaPredicted RBP11.28□□□□□ -0.6
USP49-201ENST00000373006 WDR31Q8NA23 367 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 SLC45A2Q9UMX9 530 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 C15orf65H3BRN8 121 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 SNAI2O43623 268 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 MT-CO2P00403 227 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 SP1P08047 785 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 IGLC2P0DOY2 106 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 IGLC3P0DOY3 106 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 MEOX1P50221 254 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 CD177Q8N6Q3 437 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 KCNS1Q96KK3 526 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 MCRIP2Q9BUT9 160 aaKnown RBP11.28□□□□□ -0.6
USP49-201ENST00000373006 ABCA1O95477 2261 aa11.28□□□□□ -0.6
USP49-201ENST00000373006 DPRXA6NFQ7 191 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 OR2T8A6NH00 312 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 HSBP1L1C9JCN9 74 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 TMPRSS3P57727 454 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 MORN2Q502X0 79 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 TMEM108Q6UXF1 575 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 ZNF439Q8NDP4 499 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 S1PR3Q99500 378 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 CHODLQ9H9P2 273 aa11.27□□□□□ -0.6
USP49-201ENST00000373006 BMPR1BO00238 502 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 OR7C2O60412 319 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 CA2P00918 260 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 C11orf52Q96A22 123 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 BORCS7Q96B45 105 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 SSBP3Q9BWW4 388 aaPredicted RBP11.27□□□□□ -0.61
USP49-201ENST00000373006 CST9LQ9H4G1 147 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 CLCF1Q9UBD9 225 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 TNCP24821 2201 aa11.27□□□□□ -0.61
USP49-201ENST00000373006 SAP30O75446 220 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 ZNF324O75467 553 aaPredicted RBP11.26□□□□□ -0.61
USP49-201ENST00000373006 CER1O95813 267 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 IGHV1-2P23083 117 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TNFSF4P23510 183 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 NPY1RP25929 384 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 GABRA6Q16445 453 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 AMMECR1LQ6DCA0 310 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 NIT1Q86X76 327 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 MEGF9Q9H1U4 602 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TMEM238C9JI98 176 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TIMM8AO60220 97 aaPredicted RBP11.26□□□□□ -0.61
USP49-201ENST00000373006 TIGITQ495A1 244 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 PRR27Q6MZM9 219 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 ZNF841Q6ZN19 808 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 SLC24A4Q8NFF2 622 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 FAM168AQ92567 244 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 SLC35D1Q9NTN3 355 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TSPOP30536 169 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 RAB31Q13636 194 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 MPV17L2Q567V2 206 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 ATP1A1-AS1Q5TC04 95 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TSKUQ8WUA8 353 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 LINC00479Q96M42 142 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 PRO3102Q9H379 93 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 DUSP13Q9UII6 198 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 ARL2-SNX15V9GYD0 113 aa11.26□□□□□ -0.61
USP49-201ENST00000373006 TRBV9A0A0B4J1U6 114 aa11.25□□□□□ -0.61
USP49-201ENST00000373006 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms