RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 HAX1O00165 279 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 APOHP02749 345 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-208ENST00000367256 PSG4Q00888 419 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 CLDND2Q8NHS1 167 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 ELOVL5Q9NYP7 299 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 NDUFA2O43678 99 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 APOMO95445 188 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 OR4X2Q8NGF9 303 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 KCNK17Q96T54 332 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 MAJINQ3KP22 176 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 WDR82Q6UXN9 313 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 LEAP2Q969E1 77 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 IL36BQ9NZH7 164 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 IGLV1-36A0A0B4J1U3 117 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 IGKV3-20P01619 116 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 UNC119Q13432 240 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM42Q69YG0 159 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 PCSK4Q6UW60 755 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 C1QL4Q86Z23 238 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 SEMA5BQ9P283 1151 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TRAV8-4A0A0B4J246 113 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 IGKV1D-16P01601 117 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 TSPAN7P41732 249 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 FGFRL1Q8N441 504 aa6.24□□□□□ -1.41
SYNE1-208ENST00000367256 COL11A2P13942 1736 aaPredicted RBP6.24□□□□□ -1.41
SYNE1-208ENST00000367256 LOC105371242A0A075B767 164 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 SNAI2O43623 268 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 CCL4P13236 92 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 ATP5J2P56134 94 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 ACSF3Q4G176 576 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 HELZP42694 1942 aaKnown RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PLXNA4Q9HCM2 1894 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 IGHV1-45A0A0A0MS14 117 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 GHRHP01286 108 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 FUT5Q11128 374 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF826PQ6ZT77 177 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 RNASEH2CQ8TDP1 164 aaKnown RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 WDYHV1Q96HA8 205 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM14DPA8MWL7 114 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PRR33A8MZF0 331 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 SLC25A47Q6Q0C1 308 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 G6PC2Q9NQR9 355 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PAX1P15863 534 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 C5orf30Q96GV9 206 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 SLC25A2Q9BXI2 301 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM106BQ9NUM4 274 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM242Q9NWH2 141 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TOMM7Q9P0U1 55 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PPIAL4CA0A0B4J2A2 164 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PPIAL4GP0DN37 164 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 PMVKQ15126 192 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TCF19Q9Y242 345 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 IL11P20809 199 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 MPZP25189 248 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 FAM214BQ7L5A3 538 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 A0A1B0GUT8 65 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 SAA1P0DJI8 122 aaPredicted RBP6.23□□□□□ -1.41
SYNE1-208ENST00000367256 GPR183P32249 361 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 UCNP55089 124 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 SEC11AP67812 179 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TTC9CQ8N5M4 171 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 LRTM2Q8N967 370 aa6.23□□□□□ -1.41
SYNE1-208ENST00000367256 TRAV24A0A0B4J272 114 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 CIARTQ8N365 385 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 GPHA2Q96T91 129 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TMPRSS3P57727 454 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 JPT1Q9UK76 154 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 RNF115Q9Y4L5 304 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TDGF1P13385 188 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 FOXA3P55318 350 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM74BQ9NUR3 256 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 SPINT1O43278 529 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 SRP19P09132 144 aaKnown RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 RPL39P5Q59GN2 51 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 PEAR1Q5VY43 1037 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 PNKDQ8N490 385 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 OR9G1Q8NH87 305 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 ITLN2Q8WWU7 325 aaPredicted RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 NABP2Q9BQ15 211 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 SNAI3Q3KNW1 292 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 FBLN5Q9UBX5 448 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 LHFPL6Q9Y693 200 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 LINC01549A6NIU2 74 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 PEBP1P30086 187 aaKnown RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 CSRP3P50461 194 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TM2D1Q9BX74 207 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 CD160O95971 181 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TMEM170AQ8WVE7 144 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 ST20Q9HBF5 79 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 SORL1Q92673 2214 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 IGHV3-66A0A0C4DH42 116 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 A0A1B0GW64 132 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 TBR1Q16650 682 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 C1orf53Q5VUE5 145 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 ABHD12Q8N2K0 398 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 RPP25Q9BUL9 199 aaKnown RBP6.22□□□□□ -1.41
SYNE1-208ENST00000367256 YAE1D1Q9NRH1 226 aa6.22□□□□□ -1.41
SYNE1-208ENST00000367256 IGHV3-48P01763 117 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms