RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 NPCDR1Q9BY65 106 aa10.96□□□□□ -0.66
USP47-202ENST00000339865 IGKV1D-42A0A075B6H8 117 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 TRBV5-4A0A0C4DH59 114 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 C5orf47Q569G3 176 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 ST20Q9HBF5 79 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 NANOS3P60323 173 aaKnown RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 ATG4DQ86TL0 474 aaPredicted RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 MARS2Q96GW9 593 aaKnown RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 SF3B5Q9BWJ5 86 aaKnown RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 RPRMQ9NS64 109 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 TRPM7Q96QT4 1865 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 SRSF1Q07955 248 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP47-202ENST00000339865 SIRT4Q9Y6E7 314 aaPredicted RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 LOC105371267A0A1B0GV96 52 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 ZNF826PQ6ZT77 177 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 TOPAZ1Q8N9V7 1692 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 GAGE12BA1L429 117 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 CD28P10747 220 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 DLX4Q92988 240 aaPredicted RBP10.95□□□□□ -0.66
USP47-202ENST00000339865 C5orf66Q9H5L9 145 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 CRYBG1Q9Y4K1 1723 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 TRAV9-2A0A087WT02 112 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 MPTX1A8MV57 137 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 ZNF818PQ6ZRF7 136 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 MSRB3Q8IXL7 192 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 LINC01555Q8NAE3 123 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 TSC2P49815 1807 aa10.95□□□□□ -0.66
USP47-202ENST00000339865 SPTY2D1-AS1A0A0U1RR47 76 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 FBXW9Q5XUX1 488 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 MYEOVQ96EZ4 313 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 ZNF146Q15072 292 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 RBMY1FQ15415 496 aaKnown RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 LSM4Q9Y4Z0 139 aaKnown RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 TCRBV5S1A1TA0A578 114 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 CLPSL1A2RUU4 121 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 FAM90A26D6RGX4 464 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 MGST3O14880 152 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 SPSB2Q99619 263 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 TRAV8-3A0A0A6YYJ7 113 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 IZUMO1RA6ND01 250 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 ADARB2-AS1A8MUL3 147 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 IL11P20809 199 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 UCP2P55851 309 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 SHISA5Q8N114 240 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 AGRNO00468 2067 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 A0A1W2PPC1 479 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 PDLIM4P50479 330 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 GPR132Q9UNW8 380 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 FOXA2Q9Y261 457 aaPredicted RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 TRGV3P03979 118 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 ANXA2RQ3ZCQ2 193 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 OR11H4Q8NGC9 324 aa10.94□□□□□ -0.66
USP47-202ENST00000339865 RCC1LQ96I51 464 aaKnown RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 COLQQ9Y215 455 aaPredicted RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.94□□□□□ -0.66
USP47-202ENST00000339865 C1orf174Q8IYL3 243 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 TEX45Q8NA69 505 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 IGHV3OR16-8A0A075B7F1 116 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 RAMP1O60894 148 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 ZNF114Q8NC26 417 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 TCF20Q9UGU0 1960 aaKnown RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 HLA-DQB1P01920 261 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 TRA2AQ13595 282 aaKnown RBP eCLIP10.93□□□□□ -0.66
USP47-202ENST00000339865 KIAA0040Q15053 153 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 CT55Q8WUE5 264 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 LAMB2P55268 1798 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 GREB1LQ9C091 1923 aaPredicted RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 HRKO00198 91 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 GLULP15104 373 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 CD300EQ496F6 205 aaPredicted RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 Q6ZS52 159 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 DNAJC30Q96LL9 226 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 KLHDC2Q9Y2U9 406 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 PRR19A6NJB7 356 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 MORN3Q6PF18 240 aaPredicted RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 SMIM8Q96KF7 97 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 IDI2-AS1Q9NZ38 188 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 TCF19Q9Y242 345 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 ZNF236Q9UL36 1845 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 ODAMA1E959 279 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 TBX6O95947 436 aaPredicted RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 HSD52Q0P140 79 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 PCSK4Q6UW60 755 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 RSPO2Q6UXX9 243 aaPredicted RBP10.93□□□□□ -0.66
USP47-202ENST00000339865 ANAPC10Q9UM13 185 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 PLXNB2O15031 1838 aa10.93□□□□□ -0.66
USP47-202ENST00000339865 FOXL1Q12952 345 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 GCSAMQ8N6F7 178 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 FBXL15Q9H469 300 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 KLF12Q9Y4X4 402 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 CCL1P22362 96 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 ZFP36L2P47974 494 aaKnown RBP10.92□□□□□ -0.66
USP47-202ENST00000339865 C9orf50Q5SZB4 431 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 PPP1R3EQ9H7J1 279 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 A0A087X0K7 114 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 TRAV41A0A0B4J266 112 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 CCL3P10147 92 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 SPEM1Q8N4L4 309 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 NPIPB11E5RHQ5 1161 aa10.92□□□□□ -0.66
USP47-202ENST00000339865 A8MXK9 166 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms