RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 Q8N6K4 173 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 LINC01356Q8N9X3 169 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 WFDC11Q8NEX6 87 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 OR2G3Q8NGZ4 309 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 OR2T10Q8NGZ9 312 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 RNF141Q8WVD5 230 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 MBD6Q96DN6 1003 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 C1orf159Q96HA4 380 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TMEM147Q9BVK8 224 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 WDR61Q9GZS3 305 aaKnown RBP3.3□□□□□ -1.88
MCF2-201ENST00000338585 FBXO7Q9Y3I1 522 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 ZANQ9Y493 2812 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 HECTD1Q9ULT8 2610 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 CREBBPQ92793 2442 aa3.3□□□□□ -1.88
MCF2-201ENST00000338585 TRAV20A0A0B4J274 112 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SMCO3A2RU48 225 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 TEX22C9J3V5 150 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 EIF3GO75821 320 aaKnown RBP eCLIP3.29□□□□□ -1.88
MCF2-201ENST00000338585 ACTL6BO94805 426 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 NDUFA3O95167 84 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 IFNA5P01569 189 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 OR13C7P0DN81 318 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 TMEM11P17152 192 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 RPL27AP46776 148 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 COMPP49747 757 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 SULT1A2P50226 295 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 VWC2Q2TAL6 325 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 TMEM249Q2WGJ8 235 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 BSXQ3C1V8 233 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ARSJQ5FYB0 599 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 PXDC1Q5TGL8 231 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 EIF5AL1Q6IS14 154 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 MMD2Q8IY49 270 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 CIARTQ8N365 385 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 NPBQ8NG41 125 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SRSF12Q8WXF0 261 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 PINX1Q96BK5 328 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 RNF5Q99942 180 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 FAM103A1Q9BTL3 118 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 VSIRQ9H7M9 311 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 UQCC1Q9NVA1 299 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 CACFD1Q9UGQ2 172 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 UNC79Q9P2D8 2635 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 A0A1B0GV50 99 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 MDFIC2A0A1B0GVS7 189 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SH2D7A6NKC9 451 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 NCBP2LA6PVI3 153 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 IGHV3-48P01763 117 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 MDKP21741 143 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 FGF7P21781 194 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SNCAP37840 140 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 MFAP2P55001 183 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ELLP55199 621 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 RAB11AP62491 216 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 RPP30P78346 268 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 NDPQ00604 133 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 EBI3Q14213 229 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 C5orf64Q2M2E5 130 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 BTNL8Q6UX41 500 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 Q6ZRG5 221 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 TMEM219Q86XT9 240 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 FAM213BQ8TBF2 198 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SCGB1C1Q8TD33 95 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 C22orf15Q8WYQ4 148 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 TAF15Q92804 592 aaKnown RBP eCLIP3.29□□□□□ -1.88
MCF2-201ENST00000338585 GNPNAT1Q96EK6 184 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 P2RX4Q99571 388 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 HRH4Q9H3N8 390 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 KIAA1456Q9P272 454 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ITGB1BP2Q9UKP3 347 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 A0A1W2PN81 502 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 INS-IGF2F8WCM5 200 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 AGPAT2O15120 278 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 CNIH1O95406 144 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 LY86O95711 162 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 PRH1P02810 166 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 FAM106CPP0CH98 169 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 DEFA4P12838 97 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 BRS3P32247 399 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 CHRNA7P36544 502 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 CX3CL1P78423 397 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 DLK1P80370 383 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ERHP84090 104 aaKnown RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 ZNF616Q08AN1 781 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 FXYD3Q14802 87 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ATP6V1FQ16864 119 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 C2orf83Q53S99 150 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 LCE1DQ5T752 114 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ACSM6Q6P461 480 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 BCL6BQ8N143 479 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 Q8N9W7 124 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 PIFOQ8TCI5 191 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 SSMEM1Q8WWF3 244 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 NPCDR1Q9BY65 106 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 FNDC4Q9H6D8 234 aaPredicted RBP3.29□□□□□ -1.88
MCF2-201ENST00000338585 WDR83OSQ9Y284 106 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 DMRT1Q9Y5R6 373 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 PDZD2O15018 2839 aa3.29□□□□□ -1.88
MCF2-201ENST00000338585 ITPR2Q14571 2701 aa3.28□□□□□ -1.88
MCF2-201ENST00000338585 IGHV3-21A0A0B4J1V1 117 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms