RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZP1P60852 638 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 SAXO1Q8IYX7 474 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 ZFC3H1O60293 1989 aaKnown RBP10.64□□□□□ -0.71
SDC3-201ENST00000336798 TRAV21A0A0B4J279 112 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 FAM90A26D6RGX4 464 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 H3BRM9 83 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 ATP5G3P48201 142 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 A0A0G2JLM5 398 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 DPRXA6NFQ7 191 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 NPC2P61916 151 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 C2orf68Q2NKX9 166 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 TIMM23BQ5SRD1 257 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 VGLL1Q99990 258 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 TCRBV4S1A1TA0A5B7 111 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 RBMY1BA6NDE4 496 aaKnown RBP10.64□□□□□ -0.71
SDC3-201ENST00000336798 RBMY1EA6NEQ0 496 aaKnown RBP10.64□□□□□ -0.71
SDC3-201ENST00000336798 RBMY1DP0C7P1 496 aaKnown RBP10.64□□□□□ -0.71
SDC3-201ENST00000336798 RBMY1A1P0DJD3 496 aaKnown RBP10.64□□□□□ -0.71
SDC3-201ENST00000336798 RBMY1CP0DJD4 496 aa10.64□□□□□ -0.71
SDC3-201ENST00000336798 GCM2O75603 506 aaPredicted RBP10.63□□□□□ -0.71
SDC3-201ENST00000336798 LEPP41159 167 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 C1orf100Q5SVJ3 147 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 PEMTQ9UBM1 199 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 OTOFQ9HC10 1997 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 STRCQ7RTU9 1775 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 IGKV1D-43A0A0B4J1Z2 117 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 A8MXK9 166 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 IGHV1-2P23083 117 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 GPX4P36969 197 aaPredicted RBP10.63□□□□□ -0.71
SDC3-201ENST00000336798 PRR31Q5SQ13 230 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 SHANK3Q9BYB0 1731 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 TMEM250H0YL14 139 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 OR10J3Q5JRS4 329 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 USP54Q70EL1 1684 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 IGHV2OR16-5A0A0B4J2B6 119 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 EVI2AP22794 236 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 EGR4Q05215 589 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 OR52E5Q8NH55 327 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 JMJD8Q96S16 334 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 TXNDC17Q9BRA2 123 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 Q9H3A6 140 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 NHSL1Q5SYE7 1610 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 TRGV4A0A0C4DH28 118 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 UCP3P55916 312 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 FAM89BQ8N5H3 189 aa10.63□□□□□ -0.71
SDC3-201ENST00000336798 IGHV3-73A0A0B4J1V6 119 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 GLRXP35754 106 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 NXT2Q9NPJ8 142 aaKnown RBP10.62□□□□□ -0.71
SDC3-201ENST00000336798 LAMTOR2Q9Y2Q5 125 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 SNRNP200O75643 2136 aaKnown RBP10.62□□□□□ -0.71
SDC3-201ENST00000336798 CRPP02741 224 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 AICDAQ9GZX7 198 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 UNC13CQ8NB66 2214 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 PIKFYVEQ9Y2I7 2098 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 DANCRP0C864 163 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 TBR1Q16650 682 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 ARAP2Q8WZ64 1704 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 TMEM50AO95807 157 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 ZNF837Q96EG3 531 aaPredicted RBP10.62□□□□□ -0.71
SDC3-201ENST00000336798 FOCADQ5VW36 1801 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 ZNF646O15015 1829 aaPredicted RBP10.62□□□□□ -0.71
SDC3-201ENST00000336798 FER1L6-AS1Q8NA97 138 aa10.62□□□□□ -0.71
SDC3-201ENST00000336798 SSBP4Q9BWG4 385 aaPredicted RBP10.62□□□□□ -0.71
SDC3-201ENST00000336798 TPTE2P1Q5T6R2 138 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 PLXNB2O15031 1838 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 C9orf106Q8NAJ2 232 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 TMEM167AQ8TBQ9 72 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 NEU4Q8WWR8 484 aaPredicted RBP10.61□□□□□ -0.71
SDC3-201ENST00000336798 H3BUT2 72 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 COX5BP10606 129 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 POC1AQ8NBT0 407 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 FAM57AQ8TBR7 257 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 CHCHD2Q9Y6H1 151 aaPredicted RBP10.61□□□□□ -0.71
SDC3-201ENST00000336798 BCORQ6W2J9 1755 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 GTF3AQ92664 365 aaKnown RBP10.61□□□□□ -0.71
SDC3-201ENST00000336798 RPRMQ9NS64 109 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 ICE1Q9Y2F5 2266 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 ZNF585BQ52M93 769 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 TTC9CQ8N5M4 171 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 LRTM2Q8N967 370 aa10.61□□□□□ -0.71
SDC3-201ENST00000336798 CARHSP1Q9Y2V2 147 aaKnown RBP10.61□□□□□ -0.71
SDC3-201ENST00000336798 TRAV8-2A0A0B4J237 113 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 NRN1LQ496H8 165 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 GATAD1Q8WUU5 269 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 C19orf24Q9BVV8 132 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 TRBV9A0A0B4J1U6 114 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 CSRP2Q16527 193 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 FXYD7P58549 80 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 GTSCR1Q86UQ5 136 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 RPP21Q9H633 154 aaKnown RBP10.6□□□□□ -0.71
SDC3-201ENST00000336798 KBTBD11-OT1A0A1B0GTJ5 212 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 SLC25A20O43772 301 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 ZNF708P17019 499 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 PSG7Q13046 419 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 RNASE7Q9H1E1 156 aaKnown RBP10.6□□□□□ -0.71
SDC3-201ENST00000336798 GTSF1LQ9H1H1 148 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 PRSS47A8MTI9 375 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 ATP5LO75964 103 aa10.6□□□□□ -0.71
SDC3-201ENST00000336798 RCC1LQ96I51 464 aaKnown RBP10.6□□□□□ -0.71
SDC3-201ENST00000336798 TDGF1P3P51864 188 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms