RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LPCAT3Q6P1A2 487 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 C16orf47Q6ZP98 133 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 Q6ZS52 159 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OLIG3Q7RTU3 272 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SMIM15Q7Z3B0 74 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 FAM19A3Q7Z5A8 133 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 CTAGE3PQ8IX95 158 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OR2M3Q8NG83 312 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OR5D18Q8NGL1 313 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OR2K2Q8NGT1 345 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OR5H2Q8NGV7 314 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SCGB1C1Q8TD33 95 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SFT2D1Q8WV19 159 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 TWIST2Q8WVJ9 160 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 S100ZQ8WXG8 99 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 RBPMSQ93062 196 aaKnown RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 OTUB2Q96DC9 234 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 PACRGQ96M98 296 aaPredicted RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 LINC00052Q96N35 136 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 MARVELD1Q9BSK0 173 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 MED18Q9BUE0 208 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 ULBP1Q9BZM6 244 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 CHST5Q9GZS9 411 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 COPZ2Q9P299 210 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 DHCR7Q9UBM7 475 aaKnown RBP1.72□□□□□ -2.13
HMGB1-201ENST00000326004 TAC3Q9UHF0 121 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 BAIAP2Q9UQB8 552 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 POMPQ9Y244 141 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 BTRCQ9Y297 605 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 RNF11Q9Y3C5 154 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 SNX10Q9Y5X0 201 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 HSPE1-MOB4S4R3N1 261 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 V9GYQ6 96 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 RTTNQ86VV8 2226 aa1.72□□□□□ -2.13
HMGB1-201ENST00000326004 PLXNA4Q9HCM2 1894 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SDK1Q7Z5N4 2213 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 M0R036 132 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 KCNK1O00180 336 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 OR2B3O76000 313 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 RPP14O95059 124 aaKnown RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CRHP06850 196 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 GUSBP08236 651 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 LINC00614P0C842 121 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CD28P10747 220 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SPI1P17947 270 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ERP29P30040 261 aaKnown RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TGFBR1P36897 503 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CAPZBP47756 277 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TMBIM6P55061 237 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 GTF2BQ00403 316 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TNFRSF9Q07011 255 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 PAFAH1B3Q15102 231 aaKnown RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SLC9A3R2Q15599 337 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 NEDD8Q15843 81 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SP6Q3SY56 376 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SPIN4Q56A73 249 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF678Q5SXM1 525 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ELP2Q6IA86 826 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CD200R1LQ6Q8B3 271 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 LRRN1Q6UXK5 716 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CROCCP2Q86T23 111 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 MARCH3Q86UD3 253 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 GID4Q8IVV7 300 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 HS3ST5Q8IZT8 346 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ZFP82Q8N141 532 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 STK40Q8N2I9 435 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 C9orf62Q8N4C0 152 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 C12orf45Q8N5I9 185 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 OR1M1Q8NGA1 313 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 OR4C13Q8NGP0 309 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 OR11L1Q8NGX0 322 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 PIGXQ8TBF5 258 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 HAVCR2Q8TDQ0 301 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 NEK7Q8TDX7 302 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SLC37A2Q8TED4 501 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 C10orf82Q8WW14 230 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CYGBQ8WWM9 190 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ASB13Q8WXK3 278 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TCEAL4Q96EI5 215 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 CPNE2Q96FN4 548 aaPredicted RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 PPP3R2Q96LZ3 170 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 GPR82Q96P67 336 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 THTPAQ9BU02 230 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 PDCD10Q9BUL8 212 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 DERL2Q9GZP9 239 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 MAP1LC3AQ9H492 121 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 EFCAB1Q9HAE3 211 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TMEM38BQ9NVV0 291 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 TAS2R9Q9NYW1 312 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SSR3Q9UNL2 185 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 C14orf166Q9Y224 244 aaKnown RBP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 HSPB11Q9Y547 144 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 ZNF407Q9C0G0 2248 aa1.71□□□□□ -2.14
HMGB1-201ENST00000326004 NIPBLQ6KC79 2804 aaeCLIP1.71□□□□□ -2.14
HMGB1-201ENST00000326004 SIPA1L1O43166 1804 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 PTPRBP23467 1997 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CENPEQ02224 2701 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CELSR1Q9NYQ6 3014 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 CRYBG3Q68DQ2 2970 aa1.7□□□□□ -2.14
HMGB1-201ENST00000326004 C16orf90A8MZG2 172 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms