RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 ZCCHC14Q8WYQ9 949 aaKnown RBP13.14□□□□□ -0.31
USHBP1-202ENST00000324554 ADTRPQ96IZ2 230 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 TXNDC17Q9BRA2 123 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 COL6A6A6NMZ7 2263 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 K7EN84 100 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 CA2P00918 260 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 POU2AF1Q16633 256 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 TEPPQ6URK8 271 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 MISP3Q96FF7 219 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 LINC00574Q9H8X3 128 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 DCAF16Q9NXF7 216 aa13.14□□□□□ -0.31
USHBP1-202ENST00000324554 CCKARP32238 428 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 RPL31P62899 125 aaKnown RBP13.13□□□□□ -0.31
USHBP1-202ENST00000324554 HLA-DRB5Q30154 266 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 NOL4LQ96MY1 436 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-202ENST00000324554 NDUFB7P17568 137 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 TNFSF4P23510 183 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 ADMP35318 185 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 DMRTC2Q8IXT2 367 aaPredicted RBP13.13□□□□□ -0.31
USHBP1-202ENST00000324554 ENY2Q9NPA8 101 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 OR51B2Q9Y5P1 312 aa13.13□□□□□ -0.31
USHBP1-202ENST00000324554 SLC25A48Q6ZT89 311 aaKnown RBP13.12□□□□□ -0.31
USHBP1-202ENST00000324554 OR10G8Q8NGN5 311 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 CORO2AQ92828 525 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 NDUFAF3Q9BU61 184 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 ZNRD1Q9P1U0 126 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 SLC17A3O00476 420 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 IGKV1-16P04430 117 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 CT45A6P0DMU7 189 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 CT45A5P0DMU8 189 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 CT45A7P0DMV0 189 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 IGFBP2P18065 325 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 TEX36Q5VZQ5 186 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 FAM122AQ96E09 287 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 HINT2Q9BX68 163 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 RPUSD1Q9UJJ7 312 aaKnown RBP13.12□□□□□ -0.31
USHBP1-202ENST00000324554 TNCP24821 2201 aa13.12□□□□□ -0.31
USHBP1-202ENST00000324554 DYSFO75923 2080 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 GRIFINA4D1Z8 144 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 RHOBP62745 196 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 NUP37Q8NFH4 326 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 BTF3L4Q96K17 158 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 ITPR1Q14643 2758 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 IRF2P14316 349 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 RPL29P47914 159 aaKnown RBP13.11□□□□□ -0.31
USHBP1-202ENST00000324554 YPEL3P61236 119 aaPredicted RBP13.11□□□□□ -0.31
USHBP1-202ENST00000324554 OR4P4Q8NGL7 312 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 NEUROG1Q92886 237 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 PRNDQ9UKY0 176 aa13.11□□□□□ -0.31
USHBP1-202ENST00000324554 SRRM4A7MD48 611 aaKnown RBP13.1□□□□□ -0.31
USHBP1-202ENST00000324554 CBLN1P23435 193 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 UCNP55089 124 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 CCL8P80075 99 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRR20EP86478 221 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRR20CP86479 221 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRR20DP86480 221 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRR20BP86481 221 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRR20AP86496 221 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 IQCJQ1A5X6 159 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 TMEM30BQ3MIR4 351 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 MOB3BQ86TA1 216 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 C2orf88Q9BSF0 95 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 FKBP11Q9NYL4 201 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 TP53TG3Q9ULZ0 132 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 ZNF257Q9Y2Q1 563 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 YLPM1P49750 1951 aaKnown RBP13.1□□□□□ -0.31
USHBP1-202ENST00000324554 J3QR06 171 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 UPK2O00526 184 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 ACTL6BO94805 426 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 FRMD6-AS1P0C7T7 363 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 LINC00869P0C866 280 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 TAS2R60P59551 318 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 RAB4BP61018 213 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PRCDQ00LT1 54 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 RAB31Q13636 194 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 LY6DQ14210 128 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 MIR17HGQ75NE6 70 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 PLEKHA3Q9HB20 300 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 SLC35D1Q9NTN3 355 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 ZNF835Q9Y2P0 537 aa13.1□□□□□ -0.31
USHBP1-202ENST00000324554 hADV38S2A0JD32 116 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 SCGB1D1O95968 90 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 ZNF90Q03938 601 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 RTL8BQ17RB0 113 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 WFDC8Q8IUA0 241 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 C11orf52Q96A22 123 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 LINC00312Q9Y6C7 94 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 FNDC10F2Z333 226 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 LINC00310P59036 64 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 TMEM108Q6UXF1 575 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 BEND2Q8NDZ0 799 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 CHODLQ9H9P2 273 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 IL36BQ9NZH7 164 aa13.09□□□□□ -0.31
USHBP1-202ENST00000324554 CD33P20138 364 aa13.08□□□□□ -0.32
USHBP1-202ENST00000324554 EAF1Q96JC9 268 aaPredicted RBP13.08□□□□□ -0.32
USHBP1-202ENST00000324554 POLEQ07864 2286 aa13.08□□□□□ -0.32
USHBP1-202ENST00000324554 IGKV1OR2-108A0A075B7D4 117 aa13.08□□□□□ -0.32
USHBP1-202ENST00000324554 SSTP61278 116 aa13.08□□□□□ -0.32
USHBP1-202ENST00000324554 OR5I1Q13606 314 aa13.08□□□□□ -0.32
USHBP1-202ENST00000324554 USF2Q15853 346 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms