RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 TRAV9-2A0A087WT02 112 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 TRAV8-1A0A0A6YYK1 113 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 A0A1W2PS18 150 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 TMEM250H0YL14 139 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 TMEM249Q2WGJ8 235 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 CEACAM21Q3KPI0 293 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 ZNF585BQ52M93 769 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 CENPVQ7Z7K6 275 aaPredicted RBP6.73□□□□□ -1.33
CIITA-201ENST00000324288 PIN1P1O15428 100 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 HOXA5P20719 270 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 C10orf35Q96D05 121 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 TRBV5-7A0A0A0MS05 114 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 LOC390937A0A1W2PQ73 354 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 C1QAP02745 245 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 OR2K2Q8NGT1 345 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 DIRC2Q96SL1 478 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 PRTN3P24158 256 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 FAM106AQ4KMX7 169 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 ZNF658BQ4V348 819 aaPredicted RBP6.73□□□□□ -1.33
CIITA-201ENST00000324288 STARD6P59095 220 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 SMIM8Q96KF7 97 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 TMEM50AO95807 157 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 C5orf30Q96GV9 206 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 KIR2DL4Q99706 377 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 PARP14Q460N5 1801 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 A0A0J9YW62 118 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 ATP5G3P48201 142 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 GAGE2EQ4V326 116 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 CDCP2Q5VXM1 449 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 GAGE2DQ9UEU5 116 aa6.73□□□□□ -1.33
CIITA-201ENST00000324288 A8MXK9 166 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 C21orf140B9A014 251 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 NPCDR1Q9BY65 106 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 MFAP4P55083 255 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 ZNF562Q6V9R5 426 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 MRAPQ8TCY5 172 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PLSCR2Q9NRY7 297 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 IGHV3-64A0A075B6Q5 118 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 ZNF729A6NN14 1252 aaPredicted RBP6.72□□□□□ -1.33
CIITA-201ENST00000324288 TSPAN7P41732 249 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 OR51G1Q8NGK1 321 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 CALYQ9NYX4 217 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 WDR82Q6UXN9 313 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 MIR17HGQ75NE6 70 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 COPS9Q8WXC6 57 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 SRXN1Q9BYN0 137 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 A0A1W2PQD3 144 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 ODAMA1E959 279 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 TRGV3P03979 118 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 SFTPCP11686 197 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 WDYHV1Q96HA8 205 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 RNASE7Q9H1E1 156 aaKnown RBP6.72□□□□□ -1.33
CIITA-201ENST00000324288 CRIM1Q9NZV1 1036 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 LOC105371242A0A075B767 164 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 TRAV14DV4A0A0A6YYC5 116 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 EDA2RQ9HAV5 297 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 NPVFQ9HCQ7 196 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 BHLHA9Q7RTU4 235 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 DUX3Q96PT4 197 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PPIAL4CA0A0B4J2A2 164 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PRR32B1ATL7 298 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 CGAP01215 116 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PPIAL4GP0DN37 164 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PSG1P11464 419 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 SNRPD3P62318 126 aaKnown RBP6.72□□□□□ -1.33
CIITA-201ENST00000324288 A0A087X0K7 114 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 TRBV5-5A0A0J9YX44 114 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 hDV102S1A0JD36 115 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 MPV17P39210 176 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 CRYBA2P53672 197 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 LINC00305Q7Z4B0 112 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 SELENOTP62341 195 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 PSG9Q00887 426 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 GAGE2BQ13066 116 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 IDI2-AS1Q9NZ38 188 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 TCF19Q9Y242 345 aa6.72□□□□□ -1.33
CIITA-201ENST00000324288 UBR3Q6ZT12 1888 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 IZUMO1RA6ND01 250 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 MARCH11A6NNE9 402 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 CD69Q07108 199 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 GZMBP10144 247 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 FSTP19883 344 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 GPR132Q9UNW8 380 aa6.71□□□□□ -1.33
CIITA-201ENST00000324288 PCSK4Q6UW60 755 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 NPDC1Q9NQX5 325 aaPredicted RBP6.71□□□□□ -1.34
CIITA-201ENST00000324288 MGAMO43451 1857 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 TRPM3Q9HCF6 1732 aaPredicted RBP6.71□□□□□ -1.34
CIITA-201ENST00000324288 TRBV5-3A0A0A0MS03 114 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 A0A1W2PPV9 198 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 SLC22A18ASQ8N1D0 253 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 CLDND2Q8NHS1 167 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 ORAOV1Q8WV07 137 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 MGST3O14880 152 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 LCN12Q6JVE5 192 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 CARHSP1Q9Y2V2 147 aaKnown RBP6.71□□□□□ -1.34
CIITA-201ENST00000324288 LY75O60449 1722 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 TSC2P49815 1807 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 MRPS18AQ9NVS2 196 aaKnown RBP6.71□□□□□ -1.34
CIITA-201ENST00000324288 C17orf51A8MQB3 221 aa6.71□□□□□ -1.34
CIITA-201ENST00000324288 TMPRSS3P57727 454 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms