RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 hCG_38984A0A1B0GV85 526 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 A0A1W2PP11 408 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 SMIM8Q96KF7 97 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 RPP21Q9H633 154 aaKnown RBP8.41□□□□□ -1.06
COL6A3-201ENST00000295550 SLC25A20O43772 301 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 TFF2Q03403 129 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 C3AR1Q16581 482 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 LOC390937A0A1W2PQ73 354 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF585BQ52M93 769 aa8.41□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF385AQ96PM9 386 aaKnown RBP8.41□□□□□ -1.06
COL6A3-201ENST00000295550 MFAP4P55083 255 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 SFTA2Q6UW10 78 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 OR4X2Q8NGF9 303 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 A0A087WWC5 75 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 LYPD3O95274 346 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 NHP2Q9NX24 153 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 PEX7O00628 323 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 SAXO1Q8IYX7 474 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 NDUFAF3Q9BU61 184 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 A0A1B0GW15 77 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 INO80CQ6PI98 192 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 MARS2Q96GW9 593 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 SLC25A2Q9BXI2 301 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 RBMY1BA6NDE4 496 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 RBMY1EA6NEQ0 496 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 ZNF729A6NN14 1252 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 RBMY1DP0C7P1 496 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 RBMY1A1P0DJD3 496 aaKnown RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 RBMY1CP0DJD4 496 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 HOXB1P14653 301 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-201ENST00000295550 GCSAMQ8N6F7 178 aa8.4□□□□□ -1.06
COL6A3-201ENST00000295550 FGF12P61328 243 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 RNASEH2CQ8TDP1 164 aaKnown RBP8.4□□□□□ -1.07
COL6A3-201ENST00000295550 TSPAN7P41732 249 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 ZNF124Q15973 351 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 FMC1Q96HJ9 113 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 PRDM13Q9H4Q3 707 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 PGLYRP1O75594 196 aaPredicted RBP8.4□□□□□ -1.07
COL6A3-201ENST00000295550 NRN1Q9NPD7 142 aa8.4□□□□□ -1.07
COL6A3-201ENST00000295550 CTSBP07858 339 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 ATP5G2Q06055 141 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 FBXW9Q5XUX1 488 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 LINC00305Q7Z4B0 112 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 IL36BQ9NZH7 164 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 UNC119Q13432 240 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 TMEM249Q2WGJ8 235 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 GPHA2Q96T91 129 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 A0A1B0GTI1 187 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 LINC00614P0C842 121 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 DUX5Q96PT3 197 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 IMMP2LQ96T52 175 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 LOC101059948A0A1B0GTJ6 334 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 M0R381 172 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV30A0A087WSZ9 112 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 RAMP1O60894 148 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 LPAR2Q9HBW0 351 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 IGHV3-72A0A0B4J1Y9 119 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 ACSF3Q4G176 576 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-201ENST00000295550 TNFRSF18Q9Y5U5 241 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-201ENST00000295550 SERF1AO75920 110 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 OR2H2O95918 312 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 MPZP25189 248 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 MC5RP33032 325 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 GPX4P36969 197 aaPredicted RBP8.39□□□□□ -1.07
COL6A3-201ENST00000295550 ZNF562Q6V9R5 426 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 CCL13Q99616 98 aa8.39□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV8-1A0A0A6YYK1 113 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 PF4V1P10720 104 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 IGFBP3P17936 291 aaPredicted RBP8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ZNF146Q15072 292 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 TBR1Q16650 682 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 FAM159AQ6UWV7 190 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 FGFRL1Q8N441 504 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 SFXN3Q9BWM7 321 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 HIGD1CA8MV81 97 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 PMS2CLQ68D20 193 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 WDR82Q6UXN9 313 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ASCL4Q6XD76 172 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ORMDL3Q8N138 153 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 WDYHV1Q96HA8 205 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 MGST2Q99735 147 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 C1orf174Q8IYL3 243 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV9-1A0A075B6T8 112 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 SAMD5Q5TGI4 173 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 TPRX1Q8N7U7 411 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 PSMG4Q5JS54 123 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 STARD6P59095 220 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 PSG4Q00888 419 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 FAM71F2Q6NXP2 309 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 CLDND2Q8NHS1 167 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV9-2A0A087WT02 112 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ZNF708P17019 499 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 FAM106AQ4KMX7 169 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ZNF818PQ6ZRF7 136 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 TMEM54Q969K7 222 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 SDF2L1Q9HCN8 221 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 ALPK3Q96L96 1907 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 A6NNC1 897 aa8.38□□□□□ -1.07
COL6A3-201ENST00000295550 SAA1P0DJI8 122 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms